LOC103034963 (fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900)


Basic Information

Item Value
gene id LOC103034963
gene name fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10661604 ~ 10671481 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236707
TCTGGTTGTGCCAGTTGGTGGGAGAACttgcagaaagaaaaagaacttGCCTAGCTATAGTTGTCTGACGGTTCAGTTATGGTTCGTATGCACTGATTCACTAGGCTAACCAGCAAATCTAGGCACTGTCAGTACACTCAGCTAAAAGGACAAATGGATGGTGCCAAGGATCACACAGTGCCAAGAGTTCTGGACTAATTGACTGCATACATCATGAGTTCAACAGCAGATGCTCCAAAGAATGCTAACAAAGACCCAACAAGGGCCATCTTGGCATGACACAGCCCTCACAGGGTGCAATACAGGCAGGTACCCACCTCTAAAGTAGAGGTTAGTCAAGGGGGGAGCCCGACCAGACACTGTGTAATCAATCTAATGTAACCAAAGACGACTGACTGGGCATGTGTCCAGGCACTAAACTAAACTCTGAGAACTCATGACTTGTGACAAGGGCACCCAGCACTTCAAGCCAAAGACTTCAAACCCCTCCAGTGTCCTTGGCTCCAGTGAGTCTGgtcaaaaaaaagaagcaacCTATGGACTGACCTTGGATAAGAGGTCAACGACCCAATGACCATTCCACAGCTGTGGAGGActgatatgtattttatttaacaacTACAGCTCTAGCTGAATAGCATCTTTGACTCAAACCATCATTTATGTTCTGCTTGATACACTAATCGATAGGACAACTGTAAAGGCATATTACTTCAAAAAAGACCAGATGAATGTAGCTAAATATAGATGAATGTTGATTTTTGGTGCTTTCACCTCACCCCCagttaaaaa
>XM_015602579.2
cccCTTGGCGACAACTGAAGCCGCGCTCGCTCGCACCGTCCCAGCCCCGCgcgctcctcctccttctcctcgtTCCACTCCGGCGCGCGGCGCTTCCCCCCCATTCAGCAAACGCGCTGTCCTGTGGCGAGCGAGGGGAGCTTTACCGAAACAAAAGAAggcaggaaagaaagaaagggggaGAACGGCAACAGGGCTGACCTACATCGCAGGAAAAGTTGGAAGAGTAgcgctttttatttattgtagtttctttttattatttgtacttTTGCGCGCTCTTCTCTGCGCTTTGATGCGCATCTGTCCCGGTGGTCGTTTGGCGCAGTGCTCTGAAATCAGAGGATCAGAGGATAACAGCAAACACGCCTACAGGCAGACATCAATGTCAAATCGCACCGCGCGGGAATCACCTGTGCTCTGCTGGTGGTCGTATGGTCGCGTTAACGTCGTCAGGTGGGCTCCGTCTCTGAGACGCGCGCTCAGATGCTCGCCTGGGTTCACGTGGATCGTTGGCCCGTGTTTGTGAACCGATCTCGAGCCGGAGCGGGCGCTGCACTCCAGCCATGCAGTCCATCCTCCCTTCAGTGCTGCTCATATGTGTCCAGGCTGTGCTGCTGTTGTGTAGTCTCCTGCAGGTGCTAGCAGTGGACAGTGTTGATTTTGGGGAACATGTGGAGAACCAGACAGGCGTGAGGGATAGTCTGAGCAGAAGGCATCACCGTGTGTACCAGCTGTACAGCAGGACCAGCGGCAAGCATGTGCAGGTGCTTGGCAGGAAGATCCAGGCCAGAGGAGAGGATGGGGATAAATTCGCCCAGCTTGTTGTGGAGGCAGACACCTTTGGGAGTCAGGTGAGAATTCGAGGCAAAGAGACCAACTTCTACCTGTGCATGAACCGCAAGGGCAAGCTGGTGGGAAGGAAAGCCAGTGGCAGGAACTCAGAGTGCGTCTTCATAGAGATGATGTTGGAGAACAACTATACAGCCTGGATGTCGGCGCGCTACACAGGCTGGTACGTGGGCTTTACCAAAAAGGGCCGACCACGGCGAGGGCCGCAGACCCTCCCCAACCAGCAGGACGTCCACTTCATGAAGCGATTCCCTCCAGGAGAGCAGCCCAGCCTGCAGCACTGCAGCTTCACCACTGTCAGCAAAAGAGGCAGGCGGACGCAAGAGAGTGATGGACTTCCTGACATCCACTCCTAGGGAATGGTGGAGATTCTTATCCTTGGGTTGCCTCATGGTTGTGAAAGCTTGCAGCTGAATCACAAAGACTGCAGATGAGGGCAGACCTGCATCTGCATGACCATGGAAAGAAACGTCTGGTTGTGCCAGTTGGTGGGAGAACttgcagaaagaaaaagaacttGCCTAGCTATAGTTGTCTGACGGTTCAGTTATGGTTCGTATGCACTGATTCACTAGGCTAACCAGCAAATCTAGGCACTGTCAGTACACTCAGCTAAAAGGACAAATGGATGGTGCCAAGGATCACACAGTGCCAAGAGTTCTGGACTAATTGACTGCATACATCATGAGTTCAACAGCAGATGCTCCAAAGAATGCTAACAAAGACCCAACAAGGGCCATCTTGGCATGACACAGCCCTCACAGGGTGCAATACAGGCAGGTACCCACCTCTAAAGTAGAGGTTAGTCAAGGGGGGAGCCCGACCAGACACTGTGTAATCAATCTAATGTAACCAAAGACGACTGACTGGGCATGTGTCCAGGCACTAAACTAAACTCTGAGAACTCATGACTTGTGACAAGGGCACCCAGCACTTCAAGCCAAAGACTTCAAACCCCTCCAGTGTCCTTGGCTCCAGTGAGTCTGgtcaaaaaaaagaagcaacCTATGGACTGACCTTGGATAAGAGGTCAACGACCCAATGACCATTCCACAGCTGTGGAGGActgatatgtattttatttaacaacTACAGCTCTAGCTGAATAGCATCTTTGACTCAAACCATCATTTATGTTCTGCTTGATACACTAATCGATAGGACAACTGTAAAGGCATATTACTTCAAAAAAGACCAGATGAATGTAGCTAAATATAGATGAATGTTGATTTTTGGTGCTTTCACCTCACCCCCagttaaaaaaagaaggaaaaaaaagaaaggatttacAACAGCAAGAACCATTTAGTATGTTGCAGATAGAAGAGGGGGAAAATGCGGCATCCTTGGTCTCTGGGTCACTTGTTCccaaccctggtcctggaggaTGCTGTTGTATTCACTCTTCTCCCAACACTCCTGACTTGACCGAGGTGGGTTGGAGCAGGAAACTACTCAAGTATGCAGAACAAGGGTTGGAAACAAATGATTAACATGACAGGTGAAGTTTGCATGGCAGTGATCAGAGATGTAATAGAGGTGTGATACCACTGTTTCTACTTTCATATTCATACTGATTCAATTTTGTCTTCTTTAAAAATGactgcatttttaaaatgagcCTTTTGTTGAAGCAATTCAATATTTGCACATAAAAAGCATAGGCCAGCCACTATGCCCCAGCTACTCAAACCTGTCAAGTAACAGTTTAATTTCTACAATTTTAAAGTTATGTACACACTCACAAAGAAAGTGTTTATGGAGTATTGCCATAGAAAAACAACGTTTTGGGTCTCTAAAGAACCACTCAATGAATGCATGTGCTTTTAGCACAGTCTTGCTACTACTGGCAGGCTCAAATTCAAACACTGTCAAAGaaatcattgtaaaaaaaataggtgtCAAATTGCAATGCTGTTCCATAGCAAGATAACGGTTACCAGGTATAATAAATTGTTACAAATTCAGACTGA
>XM_022681041.1
cgcccCTTGGCGACAACTGAAGCCGCGCTCGCTCGCACCGTCCCAGCCCCGCgcgctcctcctccttctcctcgtTCCACTCCGGCGCGCGGCGCTTCCCCCCCATTCAGCAAACGCGCTGTCCTGTGGCGAGCGAGGGGAGCTTTACCGAAACAAAAGAAggcaggaaagaaagaaagggggaGAACGGCAACAGGGCTGACCTACATCGCAGGAAAAGTTGGAAGAGTAgcgctttttatttattgtagtttctttttattatttgtacttTTGCGCGCTCTTCTCTGCGCTTTGATGCGCATCTGTCCCGGTGGTCGTTTGGCGCAGTGCTCTGAAATCAGAGGATCAGAGGATAACAGCAAACACGCCTACAGGCAGACATCAATGTCAAATCGCACCGCGCGGGAATCACCTGTGCTCTGCTGGTGGTCGTATGGTCGCGTTAACGTCGTCAGGTGGGCTCCGTCTCTGAGACGCGCGCTCAGATGCTCGCCTGGGTTCACGTGGATCGTTGGCCCGTGTTTGTGAACCGATCTCGAGCCGGAGCGGGCGCTGCACTCCAGCCATGCAGTCCATCCTCCCTTCAGTGCTGCTCATATGTGTCCAGGCTGTGCTGCTGTTGTGTAGTCTCCTGCAGGTGCTAGCAGTGGACAGTGTTGATTTTGGGGAACATGTGGAGAACCAGACAGGCGTGAGGGATAGTCTGAGCAGAAGGCATCACCGTGTGTACCAGCTGTACAGCAGGACCAGCGGCAAGCATGTGCAGGTGCTTGGCAGGAAGATCCAGGCCAGAGGAGAGGATGGGGATAAATTCGAGATTATGAAAAGGCAAATCGAGCACGTCCTCGGCCCGTCTAtattcctgtctgtctgtgttgtcTCTTCACAAGCCCAGCTTGTTGTGGAGGCAGACACCTTTGGGAGTCAGGTGAGAATTCGAGGCAAAGAGACCAACTTCTACCTGTGCATGAACCGCAAGGGCAAGCTGGTGGGAAGGAAAGCCAGTGGCAGGAACTCAGAGTGCGTCTTCATAGAGATGATGTTGGAGAACAACTATACAGCCTGGATGTCGGCGCGCTACACAGGCTGGTACGTGGGCTTTACCAAAAAGGGCCGACCACGGCGAGGGCCGCAGACCCTCCCCAACCAGCAGGACGTCCACTTCATGAAGCGATTCCCTCCAGGAGAGCAGCCCAGCCTGCAGCACTGCAGCTTCACCACTGTCAGCAAAAGAGGCAGGCGGACGCAAGAGAGTGATGGACTTCCTGACATCCACTCCTAGGGAATGGTGGAGATTCTTATCCTTGGGTTGCCTCATGGTTGTGAAAGCTTGCAGCTGAATCACAAAGACTGCAGATGAGGGCAGACCTGCATCTGCATGACCATGGAAAGAAACGTCTGGTTGTGCCAGTTGGTGGGAGAACttgcagaaagaaaaagaacttGCCTAGCTATAGTTGTCTGACGGTTCAGTTATGGTTCGTATGCACTGATTCACTAGGCTAACCAGCAAATCTAGGCACTGTCAGTACACTCAGCTAAAAGGACAAATGGATGGTGCCAAGGATCACACAGTGCCAAGAGTTCTGGACTAATTGACTGCATACATCATGAGTTCAACAGCAGATGCTCCAAAGAATGCTAACAAAGACCCAACAAGGGCCATCTTGGCATGACACAGCCCTCACAGGGTGCAATACAGGCAGGTACCCACCTCTAAAGTAGAGGTTAGTCAAGGGGGGAGCCCGACCAGACACTGTGTAATCAATCTAATGTAACCAAAGACGACTGACTGGGCATGTGTCCAGGCACTAAACTAAACTCTGAGAACTCATGACTTGTGACAAGGGCACCCAGCACTTCAAGCCAAAGACTTCAAACCCCTCCAGTGTCCTTGGCTCCAGTGAGTCTGgtcaaaaaaaagaagcaacCTATGGACTGACCTTGGATAAGAGGTCAACGACCCAATGACCATTCCACAGCTGTGGAGGActgatatgtattttatttaacaacTACAGCTCTAGCTGAATAGCATCTTTGACTCAAACCATCATTTATGTTCTGCTTGATACACTAATCGATAGGACAACTGTAAAGGCATATTACTTCAAAAAAGACCAGATGAATGTAGCTAAATATAGATGAATGTTGATTTTTGGTGCTTTCACCTCACCCCCagttaaaaaaagaaggaaaaaaaagaaaggatttacAACAGCAAGAACCATTTAGTATGTTGCAGATAGAAGAGGGGGAAAATGCGGCATCCTTGGTCTCTGGGTCACTTGTTCccaaccctggtcctggaggaTGCTGTTGTATTCACTCTTCTCCCAACACTCCTGACTTGACCGAGGTGGGTTGGAGCAGGAAACTACTCAAGTATGCAGAACAAGGGTTGGAAACAAATGATTAACATGACAGGTGAAGTTTGCATGGCAGTGATCAGAGATGTAATAGAGGTGTGATACCACTGTTTCTACTTTCATATTCATACTGATTCAATTTTGTCTTCTTTAAAAATGactgcatttttaaaatgagcCTTTTGTTGAAGCAATTCAATATTTGCACATAAAAAGCATAGGCCAGCCACTATGCCCCAGCTACTCAAACCTGTCAAGTAACAGTTTAATTTCTACAATTTTAAAGTTATGTACACACTCACAAAGAAAGTGTTTATGGAGTATTGCCATAGAAAAACAACGTTTTGGGTCTCTAAAGAACCACTCAATGAATGCATGTGCTTTTAGCACAGTCTTGCTACTACTGGCAGGCTCAAATTCAAACACTGTCAAAGaaatcattgtaaaaaaaataggtgtCAAATTGCAATGCTGTTCCATAGCAAGATAACGGTTACCAGGTATAATAAATTGTTACAAATTCAGACTGA

Function

symbol description
fgf18 Enables type 1 fibroblast growth factor receptor binding activity and type 2 fibroblast growth factor receptor binding activity. Involved in positive regulation of MAP kinase activity; positive regulation of angiogenesis; and positive regulation of endothelial cell migration. Located in nucleolus.

NR:

description
fibroblast growth factor 18-like isoform X2

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236707 False 792 lncRNA 0.44 1 10662314 10663105
XM_015602579.2 False 2825 mRNA 0.48 5 10661604 10671479
XM_022681041.1 True 2902 mRNA 0.48 5 10661604 10671481

Neighbor

gene id symbol gene type direction distance location
LOC103045071 LOC103045071 coding downstream 88686 10569740 ~ 10572918 (-)
LOC103044764 LOC108437809,LOC108276538,LOC107708655,LOC107678039,LOC107586135,LOC107564544,LOC107720713 coding downstream 478542 9989899 ~ 10183062 (-)
LOC103033288 NA coding downstream 879911 9779896 ~ 9781693 (-)
LOC111195102 NA coding downstream 882413 9771540 ~ 9779191 (-)
LOC103031911 NA coding downstream 909383 9750290 ~ 9752221 (-)
LOC103023191 LOC108444565 coding upstream 493852 11165333 ~ 11181656 (-)
LOC103023510 NA coding upstream 514127 11185608 ~ 11203716 (-)
LOC103024668 tlx3b,LOC108444569,LOC105024610,LOC106603212,LOC106563176 coding upstream 666937 11338418 ~ 11347577 (-)
LOC103025611 LOC108410401,LOC108277330 coding upstream 737202 11408683 ~ 11436454 (-)
LOC103026543 fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC107586150,LOC107720691,LOC107676016 coding upstream 836661 11508142 ~ 11592166 (-)
G174833 fbxw11,LOC108277126,LOC105905987,LOC105029256,LOC106603254,LOC106568099,LOC107577322,LOC104951911,LOC106611815 non-coding downstream 6699 10633859 ~ 10654905 (-)
G174814 NA non-coding downstream 29859 10624861 ~ 10631745 (-)
G174823 trpc7a,LOC108437819,LOC108277129,LOC107552051,LOC107677994,LOC107720592,LOC105905985 non-coding downstream 47075 10606334 ~ 10614529 (-)
G174789 NA non-coding downstream 254067 10407258 ~ 10407537 (-)
G174786 NA non-coding downstream 338785 10322571 ~ 10322819 (-)
G174835 NA non-coding upstream 4062 10675543 ~ 10676009 (-)
G174865 NA non-coding upstream 63562 10735043 ~ 10760543 (-)
G174886 LOC108437803,LOC108276799,LOC108276796,LOC108276792 non-coding upstream 157983 10829464 ~ 10848896 (-)
G174890 NA non-coding upstream 160867 10832348 ~ 10909515 (-)
LOC111195030 NA non-coding upstream 231933 10903414 ~ 10906569 (-)
LOC111195018 LOC108437801,LOC108433198,LOC108433218 other downstream 1064991 9585467 ~ 9596613 (-)
G174497 stt3a other downstream 2015300 8642965 ~ 8646304 (-)
LOC103039277 NA other downstream 2163668 8366306 ~ 8497936 (-)
G174284 NA other downstream 2795041 7792064 ~ 7866563 (-)
G174311 NA other downstream 2867215 7794137 ~ 7794389 (-)
LOC103030477 NA other upstream 726068 11397549 ~ 11403701 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other upstream 770830 11442311 ~ 11460030 (-)
G175072 NA other upstream 971836 11643317 ~ 11643632 (-)
G175119 NA other upstream 1156326 11827807 ~ 11931754 (-)
G175583 NA other upstream 1951730 12623211 ~ 12623555 (-)

Expression


Co-expression Network