G174997


Basic Information

Item Value
gene id G174997
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11439141 ~ 11439725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236982
GTAGGTGATAAGGAGGATCTTGAAATGTATGCGTTGTTTTATGGGAAGCCAATGGAGTTGACGGAGGACAGGGGTAATGTGCTGTCTAATGGGGGAGCGGGTGAGCAATCGAGCAGCAGAGTTCTGGACATATTGGAGTTTTTGAAGAGCAGTAGAGGGGAGACCATACAGGATGCTattgcagtagtcgagtctgGAGGTGATAAAGGCATGAATTAATGTCTCTGCAGCAGGAGTGGGAAGAGTGGGTCGCAGGCGTGCAATATTACGTAAGTGAAAGAACGATGTTTTAACTATGTGGTTGATGTGTGATTTGAAGGAAAGTGTAGGGTCCAAATAGATTCCAAGGTTTCTGACAAGTGGGGAAGGAGTGACAGAGTGACCGTCAATACAGAGAGTGAAATTTTGACAGGTGGAGAGGCTGGATTTTGGACCAAAGATAATAATCTccgttttattactgtttagtTTGAGAAAATTATGGTTCATCCAGTCTTTGATATCCATGAGGCAGCAAGTGAGGGTGGAGAGGATGGCAGGGGAGATGGTTTTAGTGGTGATGTAAAGCTGGATATCATCAGCGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236982 True 585 lncRNA 0.45 1 11439141 11439725

Neighbor

gene id symbol gene type direction distance location
LOC103023833 LOC107678029 coding upstream 105108 11324888 ~ 11334033 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding upstream 116806 11250375 ~ 11322335 (+)
LOC103030157 NA coding upstream 280953 11154950 ~ 11158188 (+)
LOC103029829 NA coding upstream 313397 11113815 ~ 11125744 (+)
LOC103022370 LOC103022370 coding upstream 354494 11081892 ~ 11084647 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding downstream 310488 11750213 ~ 11865916 (+)
LOC111195033 NA coding downstream 495935 11935660 ~ 11939097 (+)
LOC107197312 NA coding downstream 548444 11988169 ~ 11993224 (+)
LOC111195107 NA coding downstream 650903 12090628 ~ 12095289 (+)
cnih2 cnih2,LOC100706298 coding downstream 704326 12144051 ~ 12151050 (+)
G174986 NA non-coding upstream 22548 11410097 ~ 11416593 (+)
G174983 NA non-coding upstream 37528 11401393 ~ 11401613 (+)
G174964 NA non-coding upstream 174019 11190481 ~ 11265122 (+)
G174944 NA non-coding upstream 301184 11137549 ~ 11137957 (+)
LOC103022678 NA non-coding upstream 343241 11093717 ~ 11095900 (+)
G174998 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017 non-coding downstream 2627 11442352 ~ 11460006 (+)
G175004 NA non-coding downstream 57223 11496948 ~ 11503865 (+)
G175065 NA non-coding downstream 159296 11599021 ~ 11599233 (+)
G175068 NA non-coding downstream 198529 11638254 ~ 11638491 (+)
G175073 NA non-coding downstream 204416 11644141 ~ 11644448 (+)
G174994 NA other upstream 2611 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 419723 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 807376 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2286008 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2886531 8548884 ~ 8552610 (+)
G175108 NA other downstream 469147 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 751631 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1084416 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1299778 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1853573 13293298 ~ 13329018 (+)

Expression


Co-expression Network