G175004


Basic Information

Item Value
gene id G175004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11496948 ~ 11503865 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236993
AAAAAGGAGACAGAAGAGAAATCAATAAACTGATTGAGATacgacaaaaagaaaaaagaaacgaaagtaattaataaagattcaaaagagaaaggaaaaaaatcaagagagagaaaaacagaaaaaagaacgaacagaagaaaagagacagaaaatgaAATGAGGGAGAGGAAAATTGGAGCAATtaggagaaatggagagagagagagagcatcgtGAGACACTGCAAGAACGAAAGAAAAAcagggatagatagatagagaatgAAATTAAGAAGAGTACCAAGAAGAGAAAAGGCAGAGAAAAGACGGAAATGATGGAGTCAGTGAGAAGAATgttagaaacagagagaaaaatatgaaagagagaaaagacagagggagtgagagaggatgGGGACGGTGTGAATCAACCAGGTTCAGGCCAAGAGATAAATATGCTTCATCAGTGTgtgttgtttctgtgtgtgtgggtttgttcGGTATCTGTTCTATTTCTGCGCGTGTGTtgagtgtgtatctgtgtgtgtatgtgtgtttagggGTGTTACTGTAGAGGGGATTTCCCCCCACAGTCCATGAGAACGCTTTCAGTTCACTGTGTACTGAATGtcctctgctgctgcagcgTCCAATCAGAGCTCAGCGTGCTCCGCTACTGCGCCCGCTTCAGCTCTTATTGAGTCAATCGATCGTTACTACTctgtcctttctctctctctctctcctctctctctctctctcctctctctctctctctctctctctcatacacatacacatacacacacttttgtTCTCCTATTGCTctttgtctctcgctctcttccacacacacacacaggtacatacacacacacacactcaggtaCACAGCGCTGTTGGGAAGGTTAATTGCCATTGGACACACAGGACAGGGTTTGGGGAGATTGCTCGGGAAATGGAGCATGACTTCAcacagggagtgtgtgtgtgtgtgtgtgtgagagagagagagagatacacattTGTCCTTGTATTCACCGTGTCTCTGTGGAGCCAGgtaacccacacacacacacacacacctaaacacacacctacacacacacaaacacatacacacccatCCCCCACCCTTAAAGAATTCTCAGCTTCCGCCTCTTCACCCATGAAACCGTCCTTCCCCGAAGTACTGCATAATAAAGCTGGAGATGTTCTCCGAGCAGCACTAAAGCACTAAAAAAACTCACTTACTCTCCCCCATCTCCGCGTCCGGCGTAATGATCCGTCCACCCCGTCCAAACACTTTCAATCTGTCTACTGTCATTCCAAACAGCCTCGTTCCACCACCGCTTCACTCCCGTCTTCACAGCTGAAGCTTCTTCTCgtcttctctctcacactctctctctgtccttacTGTCTCCCAAACCAACTATAACACTGCCTGTTCACTCCGAGCTCTTCTTCCCAGACCAGGTGACTGCTGCTGACCACTGCTGACCATCTCTGACCATCTTCAGACCTtcttttgtctttatttgctgtTCTCTGACTTGCTCTGACTTTCTTTGACCTTGACTCTAACCTCTACTCTAACCTACTTTTCTACACTTTCGTTGACATTTGTTCAATTTGTTTGATCTTCTGTTTTATTTGATCATCTTTGACTGTATTTGCCTGTGTGCAACTTTAAGTTTATTTGACCTTCTTTGACCTCATTTGACTTTCTTTGATGCTCATGACACTGACCTTCATTGAACTTGCTTAACTCTGTTTGAACTTGTTTGCcctttttgattttctttttctgtatttctttgataaaaaaaaaatatccaaaaataaACCTACACCTTGCGATCTTTCTGAAGTTTAACAGTGCGAAGTTATACTGTAAGTTCATCATGGAACATAGTAGCCCgcactcaataaaaaaaacaagagtttaGCTGACTAAATCCTGTGATTCCAAGGCGGACATGTTTCGGCTCACGTCGTCCTCAACGCCCTGAAACTCTTTCTTCTTATTGAATGTGGGCTTCTGTGTTCCATGAagaactttgtttttctttgatcATCATCATTTGCTCATATTTGATTTTTCTTTACCTGAATGTATTTgactttggcctgtttttcagtttgttcgtatttgtttgtttgaccTTCATTGACATTCTTTGCCATCATATCACATGAATTTATTAATCCATCTTTGACCCCAATTACCTTGACTTTCTTAGTTGTCCTTTGTCTTCTCTTGCCTATCTCTGACTTAGTGTATCTTTTTGTaatgttatttgtgtttcttttatcTTCTGTGACTTTCTTTAGCTTTATATGACTGTCTTGACCTTGAATTGTTTGTcttatatataacaatatttaactTCTTTGATGTTTTTACATTCTTGACCTTCACCTTCTTTTGCCTCTTTTGAAtatattcatcttttttttctaattttgacTTTCCTTTGACTTCTTTGACTTTCTTGATCTCTTTTTGATGTCTTTGTTTACtgattttgtctttattttatcaTCTTTGATCTTCTTAACCTTGGTGTGACATTACTAATCCTTCCTTCACTGTCCTGCCTTGGCTActtgtctctttgtctcttttcgATGTCCATACCTTGACTTTGTTAGTTCTCCTTTGTCTCCTCTTTCCCATCTCTGACTTAACTTATctttctgcaatattatttgtgtattttttttaaactactttGACTTTCTTTAGCTTTATATGACTTTCTTGATCTTGAATTGTTTGTCTTTCATGACCTGGGTTTTCTTTGTCATTATTTGATCTTATTTATCAATCTTTAACTTCTTTGATGTGTTTAAATTCTTGACCTTCACTTTCTTTGGCCTCTTTTGAATAtagccatctttttttttttactttcctttGACTTCTCTTTTTTGATGTCCTTTGTCCTTCTTTGatcttctttgtctttctttgacTTAACATGATTTATTTGACATTGACATtctttgtctgttttctgttctgACCATCACTGTCTTTCTTTTTGACCTTCTGTTGACCTTGAATCTCCACCACACACTCTTCCTTCAGACACTTAACTAAGACGGTCTTCTGACGTACTTTATCCTTAAACTCACAACATTCTCAGCACGTTTTTGACGACATTCTGCAAACCCTCTCACATTGCGACATGCTCTGATCGTCTGACCTTCAGCGACATTCACTTTACCATCAAGGATCTACTTTCTATTGTTCGGCTGGTTTGAATGCTTGACCCACCCACAGGCCTGGGGATGggcttcactcactcacacacacacacacacacacacaaacatctgCAGTATCATCACTGCAGGCCAGAAGTTTCTTTCTGTTATTATTCAGAAAGTACAGCGTGAAGCTTCACTACTTTTGGCCTGTAATGCACTTACTAATCTGTCAGTTATCCCGACAGCGGAATGACTCTGACAAGGCCAAACTGAGGTCATGCTTCCGTCCAGCCTGTGAAATATATGACCACAGCGGAGCTTCTTGGCCAGTGGAGTTTTTTTCATTAAGCACAATGTCTGATGGCTCTTTTCCAAAAGTCATCACAGAGCGGCATGTCTGGCTCATCTGCAGGACCACAGGCCAGCAGTACTGTCTATGGGctggacacacatacacacacacacacacacacacacacacacacacacacattgagtaAAGTGATTGCAGAgcaaagcagtgtgtgtgtgtgtggattgggTAAAGGCTGGGAGAGGATAAGCGGGAGGGCATGTGCAGAATAATAatcagttcacacacacacacacacatacatacacacacacacacacttccaccaCTTTGATGTCACTTTTCAGCTTCTGGTTACTGGGTCTCACACTAAGGCCATCGTAAAATAGgtcaaaataatcaaaatgaCCACAACCAATCAGAAGCTTTATATGCAAATGAATGATAATGAGGGGAAAATGGTGCAGATAGAAGCATTTTTGGGGCATTAATgttgagcacacacacacacacacacaccacaaacagacaaaacacacacatatacacacactccataTGGTGTAATGCAAATGGCTTAGAAATTCCATTCACATCCAcaattacactctctctctctctctctttctctctctctcacacacacacacacacacacacacacatacacacactccataTGGTGAAATGCAAATGGCTTAGAAATTCCATTCACAtctgtaccacacacacatacacacactataatagGAAACTGTCGATACAAATGCAAATGGCTTAGCAATCTCAATTCATATTTATAGCctaaatccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactatactggCAGATACTTTTTTCCCTTCACTTAAAGGAGCAGGTCGAAGAAACTTGACTGATCACTGATCCCagatcagccaagacatgttgGGTATCTGAAGTGTGCCTCTTTAGTTAAACCAGCagatgctaagctaatgttgctaacaaaccCTGGACTGGATAGTTAAGCTAAACTGTGACTGGAGTGATACCATACACTGTGGTGAGCTGAAAGTAGTTCCGGTTACTCCAGAGAGTCCAGCTCTGTGGAAGCGTTtgtgtttatagattaaatGAAGCCAATCTGTGTTCAAAACCACGCCCATGTGTCATGCTAATGAAAAGTTGGGTTTTGAGAGATGTTTGGTTTACTGAGATGTAATTTGTGACTGTCTAAGCTCAGTGTTTGTAAGCAAAGTTAGCTCAAAAAAGCTAAAAGTCAGACATCAACcatgtcttggctgatcaaCAGCTCATTAGATTTTCTGTTGAATTTGTCTTTAGACGTGTTCTCGTTTCCAGGACGCTTTGTTCATAATTTAAGTACTTATGGTGACACTTAATTAAAGGTTAGTCTTCATACTGTCCATATATTTCTTGGTAACTGACATAAACCTGTATGGACCTTTATATAGACCAAATAAGCCTACATAAACGTTAATATAGGGTTATGTGGCATATGTGTCATATGGTCTTAACATTTTGTAATAAGCCtttggaaatgtttataaaggcTTGTGTAGGTGTCCGATTGCCTTGACGTTTTGTAATAAGCCTTTATAAGCATGCATATTGGCGTCATAGGGCTTTCTTGTAGTAATAAGTCTCCATAAATGTATATGTAGGTTTTTGTCTGTTGTAGTGGAAGACTTGTGTAGTTGTTACGTGGCCTTATCTTGTTGTAATCAGTCTTTGTATATGGTCATGTAGGTGTCATAAGGGTTCATAAGAGTTTGTTTATGCAGGTTAATGTTGTTGTAGTGGAAGACTTGTGTAGCAGTTACATGGTCTTATATTGCTGTAATAAGCCTTCATAAACATTTATGTAAGCTTGTGTAGTTGTCACATGGCCTTAACTTGTTATAATAAGGCTTATTAAATATGTTGGTGTCATGGATTTCTTGTGGTAAAAAGCCTTCATGAATGTTTATATAGGCATACCTAGATGTCATATTGCCTTATCGGCTTGTAATAAGACTTCATAAATGTATATGTAGGGTTTTGTCTGTTGTATTGGAAGACTGTGTAGTTGGTATGTGGCCTTATCTTATTGTAATCAGACTTCATAATAATTTATGTAGGTTAATGTTGTTGTAGTGGAAGGCTTGTGTAGTTGTTACGTTGCCTTATCTTGTTGTATTAAgcctttataaacatttatgtagGCTTGTGTAGGTGTCATATGGCCTTAACTTGTTATAATAAGCCTTTTTAAACATGTACGTTAATGTCACATGGATTTCTTGTTGTAATAATCCTTTTTATAGGCTTATGTAGGTGTCATATTGCCTTATTGCCATGTCATAAGCctgtataaatgtttatataggcttatgtagATGTCATATTGCCTTATTGTCATGTTATAAGCCT

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236993 True 5977 lncRNA 0.39 3 11496948 11503865

Neighbor

gene id symbol gene type direction distance location
LOC103023833 LOC107678029 coding upstream 162915 11324888 ~ 11334033 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding upstream 174613 11250375 ~ 11322335 (+)
LOC103030157 NA coding upstream 338760 11154950 ~ 11158188 (+)
LOC103029829 NA coding upstream 371204 11113815 ~ 11125744 (+)
LOC103022370 LOC103022370 coding upstream 412301 11081892 ~ 11084647 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding downstream 246348 11750213 ~ 11865916 (+)
LOC111195033 NA coding downstream 431795 11935660 ~ 11939097 (+)
LOC107197312 NA coding downstream 484304 11988169 ~ 11993224 (+)
LOC111195107 NA coding downstream 586763 12090628 ~ 12095289 (+)
cnih2 cnih2,LOC100706298 coding downstream 640186 12144051 ~ 12151050 (+)
G174998 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017 non-coding upstream 36942 11442352 ~ 11460006 (+)
G174997 NA non-coding upstream 57223 11439141 ~ 11439725 (+)
G174986 NA non-coding upstream 80355 11410097 ~ 11416593 (+)
G174983 NA non-coding upstream 95335 11401393 ~ 11401613 (+)
G174964 NA non-coding upstream 231826 11190481 ~ 11265122 (+)
G175065 NA non-coding downstream 95156 11599021 ~ 11599233 (+)
G175068 NA non-coding downstream 134389 11638254 ~ 11638491 (+)
G175073 NA non-coding downstream 140276 11644141 ~ 11644448 (+)
G175083 NA non-coding downstream 165036 11668901 ~ 11732013 (+)
G175085 NA non-coding downstream 386876 11890741 ~ 11901547 (+)
G174994 NA other upstream 60418 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 477530 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 865183 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2343815 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2944338 8548884 ~ 8552610 (+)
G175108 NA other downstream 405007 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 687491 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1020276 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1235638 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1789433 13293298 ~ 13329018 (+)

Expression


Co-expression Network