G175108


Basic Information

Item Value
gene id G175108
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11908872 ~ 11913456 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237151
AGGCGGGATGGAAGAAGGGCCTATCCTGACTGATCACATGGTAACGAATGGAATGGATAGTCACAATGAGAAGTTTCTCCGGAAGTGCACTTGCGGGTGGCAGAAGGTAACATCACTCAGAGGGTTGCATATCCATCAGGGGAAGATGAAGTGTGGGAGGATAGCCAATCAGCACGACCGCGCTGCTGCGGCAGGTCAGACGGCAGGGACCGGAAGCCAGGTTTCAAACCACAGTGCAGCAGGACCCAGTAGTGCTGAACAGGCAACCTCAGCAGAAGTATTGGAAAGCAGGGAGGCAACCCCTGAGAGCACATTTCAGGCTGCACCTCCTCCTTTGGGGGTAGCACAACCAGCAAGCCAGCGCAAGCAACTGGGAAGGCGCAATAAGATCAAATGGCCGAAAAGTAAAAGCCAGGAGGAATGGCGTAGCCTCGATGATCATCTGAGCGTAGTGCTGGAGCACTCCTTGCGAGGTACAGTGGAGCACAAACTAGCCTCGCTGAGCAACATCATATACGAAGAATGTCGAGAGAGATTTGGGGAATGTGCAGAAAAAAGAGCCCCTGCCCCAAGACAGaaaggaagaagagagagaggtattgAGGAGCTTATAGCCAATAGGCGCGAACTGCGTAAGAGGTGGAGGAAAGCAGCCCCAGAAGAGTGGGAAGGTCTCAAGCTACTGTGGAGCGACCTCAAGCAGAGGCTCGGAAAGCTGCGCCGGGCAGAACGAATTAGGAAGCGGAGGCAACggaaggagaaagaaaggagagactTCTATAGG
>TU237152
AGGCGGGATGGAAGAAGGGCCTATCCTGACTGATCACATGGTAACGAATGGAATGGATAGTCACAATGAGAAGTTTCTCCGGAAGTGCACTTGCGGGTGGCAGAAGGTAACATCACTCAGAGGGTTGCATATCCATCAGGGGAAGATGAAGTGTGGGAGGATAGCCAATCAGCACGACCGCGCTGCTGCGGCAGGTCAGACGGCAGGGACCGGAAGCCAGGTTTCAAACCACAGTGCAGCAGGACCCAGTAGTGCTGAACAGGCAACCTCAGCAGAAGTATTGGAAAGCAGGGAGGCAACCCCTGAGAGCACATTTCAGGCTGCACCTCCTCCTTTGGGGGTAGCACAACCAGCAAGCCAGCGCAAGCAACTGGGAAGGCGCAATAAGATCAAATGGCCGAAAAGTAAAAGCCAGGAGGAATGGCGTAGCCTCGATGATCATCTGAGCGTAGTGCTGGAGCACTCCTTGCGAGGTACAGTGGAGCACAAACTAGCCTCGCTGAGCAACATCATATACGAAGAATGTCGAGAGAGATTTGGGGAATGTGCAGAAAAAAGAGCCCCTGCCCCAAGACAGaaaggaagaagagagagaggtattgAGGAGCTTATAGCCAATAGGCGCGAACTGCGTAAGAGGTGGAGGAAAGCAGCCCCAGAAGAGTGGGAAGGTCTCAAGCTACTGTGGAGCGACCTCAAGCAGAGGCTCGGAAAGCTGCGCCGGGCAGAACGAATTAGGAAGCGGAGGCAACggaaggagaaagaaaggagagactTCTATAGG
>TU237153
AGGCGGGATGGAAGAAGGGCCTATCCTGACTGATCACATGGTAACGAATGGAATGGATAGTCACAATGAGAAGTTTCTCCGGAAGTGCACTTGCGGGTGGCAGAAGGTAACATCACTCAGAGGGTTGCATATCCATCAGGGGAAGATGAAGTGTGGGAGGATAGCCAATCAGCACGACCGCGCTGCTGCGGCAGGTCAGACGGCAGGGACCGGAAGCCAGGTTTCAAACCACAGTGCAGCAGGACCCAGTAGTGCTGAACAGGCAACCTCAGCAGAAGTATTGGAAAGCAGGGAGGCAACCCCTGAGAGCACATTTCAGGCTGCACCTCCTCCTTTGGGGGTAGCACAACCAGCAAGCCAGCGCAAGCAACTGGGAAGGCGCAATAAGATCAAATGGCCGAAAAGTAAAAGCCAGGAGGAATGGCGTAGCCTCGATGATCATCTGAGCGTAGTGCTGGAGCACTCCTTGCGAGGTACAGTGGAGCACAAACTAGCCTCGCTGAGCAACATCATATACGAAGAATGTCGAGAGAGATTTGGGGAATGTGCAGAAAAAAGAGCCCCTGCCCCAAGACAGaaaggaagaagagagagaggtattgAGGAGCTTATAGCCAATAGGCGCGAACTGCGTAAGAGGTGGAGGAAAGCAGCCCCAGAAGAGTGGGAAGGTCTCAAGCTACTGTGGAGCGACCTCAAGCAGAGGCTCGGAAAGCTGCGCCGGGCAGAACGAATTAGGAAGCGGAGGCAACggaaggagaaagaaaggagagactTCTATAGG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU237151 True 784 TUCP 0.53 2 11908872 11913456
TU237152 False 784 TUCP 0.53 2 11908872 11913456
TU237153 False 784 TUCP 0.53 2 11908872 11913456

Neighbor

gene id symbol gene type direction distance location
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 42956 11750213 ~ 11865916 (+)
LOC103023833 LOC107678029 coding upstream 574839 11324888 ~ 11334033 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding upstream 586537 11250375 ~ 11322335 (+)
LOC103030157 NA coding upstream 750684 11154950 ~ 11158188 (+)
LOC103029829 NA coding upstream 783128 11113815 ~ 11125744 (+)
LOC111195033 NA coding downstream 22204 11935660 ~ 11939097 (+)
LOC107197312 NA coding downstream 74713 11988169 ~ 11993224 (+)
LOC111195107 NA coding downstream 177172 12090628 ~ 12095289 (+)
cnih2 cnih2,LOC100706298 coding downstream 230595 12144051 ~ 12151050 (+)
LOC111195108 NA coding downstream 401276 12314732 ~ 12316734 (+)
G175085 NA non-coding upstream 7325 11890741 ~ 11901547 (+)
G175083 NA non-coding upstream 176859 11668901 ~ 11732013 (+)
G175073 NA non-coding upstream 264424 11644141 ~ 11644448 (+)
G175068 NA non-coding upstream 270381 11638254 ~ 11638491 (+)
G175065 NA non-coding upstream 309639 11599021 ~ 11599233 (+)
G175157 NA non-coding downstream 31941 11945397 ~ 11945895 (+)
G175160 NA non-coding downstream 35352 11948808 ~ 11949769 (+)
G175169 NA non-coding downstream 69807 11983263 ~ 12037811 (+)
G175201 NA non-coding downstream 151822 12065278 ~ 12069322 (+)
LOC111195036 NA non-coding downstream 273787 12187243 ~ 12189381 (+)
G174994 NA other upstream 472342 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 889454 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1277107 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2755739 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 3356262 8548884 ~ 8552610 (+)
LOC103027177 tmem261,LOC103027177 other downstream 277900 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 610685 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 826047 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1379842 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1440312 13353768 ~ 13418416 (+)

Expression


Co-expression Network