CI01000012_13640633_13647067


Basic Information

Item Value
gene id CI01000012_13640633_13647067
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13639127 ~ 13647092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13640633_13647067.mRNA
ATAAAGCCCAGCTCCGATCTCCAGAATGGATGCACTGAAGAAGGGATTCTCCATGGCTAAGGAGGGAGTGGTGGCCGCCGCTGAGAAAACCAAAGCAGGGGTGGAGGAGGCAGCTGCCAAAACCAAAGAGGGGGTCATGTATGTAGATCACAAATTCATCTGCCTAGACTCTGCTGTAAACAAGACTGATAAACAACTTACATGGTTACTAGTACTGTGGTTATTTACTCTGTCCAGAGCAGTAGCCCTCCATGTATACTCTCAAGAATGGAAAACAACTGAGCAGGCGAATGTTGTGGGTGAGAGTGCCGTGGCTGGAGCCAATCAGGTGTCAGAAAAGGCAGTGGAGAGCCTGGAGACTGTGGTCGCATCCACTGGCCTGGTCAAACCGGTGGAGCTGTCGAAGCAGGAGGGAGCTGTAGAGCAGCCTACAGATGCTGGACAGTAGGTGAGGTGAGTTGGGAGATGTTTTTTTTGTTTGTTTTTTTTTTGTTTTTTTTTTGAGATGGGATTTGTTTTTTAAAAAAATCTGTAATAATTGTCCTTTTTTTTATATGATAGCATAAATCTAACAATATATTGATTGAATTTAGTTAGTTGTATGCTTAAAATGGGAACAAAAATGAAGTGGGGTAAGAAAAATATTCAAATTCAAAAAATATAAATTTTATAATACAAATTTTACTTGTCATATACAGATGAAAAAATGATTTTTGCAGTTTAACTGGTCGTTTTAAATGATACAGTTGAGCTCAAAAGTTTACATACCTCTTGAAGAATCTAGAAAAATGTGAATCATTTTAACAAAATAAGAAGGATCATGAAAATTGCATTTTTTATTTAGTACTGTCCTGAATAAACTATTTCACATAACAGTTGTTTACATAAAGGCCACACAAGACAAAAAAATAGCAGAATTTATAAAAATGACCCCATTCAAAAGTTTACATACCCTTGATTCTTAATACTGTGTGTCATTACCTGGATGATCCACGACTGTTTTTTTGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTCGTTCTGAGCAGTTAAACTGAGCTCTATTCTTCAGAAAAATCCTTCAGGTCCTGCAGATTCTTTGGTTTTCCAGCATCTTTTGCATATTTGAACCCTTTTCAGCAGTGACTGTATGATTCTGAGATCCATCTTTTCACACTGAGGACAACTGAGGGACTCAAACACAAGTATTAAACAAGGTTCAAACATTCACTGATGCTCCAGAAGGAAACACGACGCATTAAGAGTCGGGGATGTAAAATTTTTGAAATGGATGAACAGAATAAATTGTACTTTTTTGTCTTCTGGAAAACATGTAAGTATCTTTTGTAGCTTCCAAAGGGCAGAACTAAATATGTTCTTTAAACAAAACAAAAAAAACTTGCACATCAACTTCTTGTTCAAAAGTTTTCACTCCTAACTCTTAGCGCATTGCGTTTCCTTCTGGAGCATCAGTGAATGTTTGCAGCTTTTGTTTGAGTCCCTCAGTTGTCCTCAGTGTGAAAAGATGGATCTCAGAATCATACAGTCACTGCTGTAAAGGGTTCAAATATGCAGAAGATGCTGGAAAACTGAAGAATCTGCAGGACCTGAAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGAACAAACAAGGGACTCATGAACAACCATCACAAAACAAAAAAACAGTCGTGGATCATCCAGGTAATGACACACAGTATTAAGAATCAAGGGTATGTAAACTTTTGAATGGGGTCATTTTTATAAATTCTGCTATTTTTTTTTTTTTTTGTATTGTGGACTTTATGTAAACAACTTATGTGAAATAGTTTATTAAGGACAGTACTAAATAAAAAATAACATGCAATTTTCATGATCCTTCTTTTGTTAAAATGATTAACATTTTTGCAGTATGTAAACTTTTGAGCTGTATATGTAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13640633_13647067.mRNA True 1954 mRNA 0.36 4 13639127 13647092

Neighbor

gene id symbol gene type direction distance location
CI01000012_13634251_13634759 NA coding downstream 4368 13634003 ~ 13634759 (-)
CI01000012_13608026_13615552 NA coding downstream 23561 13608019 ~ 13615566 (-)
CI01000012_13593620_13605408 NFKB2 coding downstream 33139 13593601 ~ 13605988 (-)
CI01000012_13590555_13590800 NA coding downstream 48327 13590522 ~ 13590800 (-)
CI01000012_13538979_13549803 NA coding downstream 89324 13538679 ~ 13549803 (-)
CI01000012_13674799_13681526 BMPR1A, BMPR1AA coding upstream 27707 13674799 ~ 13681526 (-)
CI01000012_13688796_13690597 NA coding upstream 40570 13687662 ~ 13691363 (-)
CI01000012_13701681_13728253 LDB3, LDB3A coding upstream 54484 13701576 ~ 13728253 (-)
CI01000012_13747055_13764699 OPN4A coding upstream 98832 13745924 ~ 13764699 (-)
G77424 NA non-coding downstream 51575 13585506 ~ 13587552 (-)
G77423 NA non-coding downstream 53744 13580834 ~ 13585383 (-)
G77409 NA non-coding downstream 85365 13553474 ~ 13553762 (-)
G77407 NA non-coding downstream 87542 13551252 ~ 13551585 (-)
G77315 NA non-coding downstream 152907 13485536 ~ 13486220 (-)
G77447 NA non-coding upstream 77805 13724897 ~ 13726271 (-)
G77449 NA non-coding upstream 94022 13741114 ~ 13741441 (-)
G77287 NA other downstream 5308 13619276 ~ 13633819 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other downstream 683463 12954446 ~ 12957833 (-)
CI01000012_12079581_12084139 NA other downstream 1554867 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 1586920 12046728 ~ 12052541 (-)
G75608 NA other downstream 3018256 10611915 ~ 10620871 (-)

Expression


Co-expression Network