G175272


Basic Information

Item Value
gene id G175272
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12319950 ~ 12326872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237359
CGCATTACTGCCTTCTGTGAGGGAAAATCAACATTTACTTCATGTATTCATAATCAATTACACTGATTATTCATTCAATCAGTATTATTACTCCCTGTAACAGAGTTGATTACTGTATTCTTGTATTACACTATATTCTTGTATTTTATCATTGAGTGTTATGTGAACTTGTATTCTCTGCTCCTGTGACAAGGCTCAGACTTGAGGGGCAAAGGAAAGAAAGTCGAGGTCTGCCTGGAGACGAGCGGGTCATAGCAAATGGAGCTttctgatttatgaattattcttgACTTTTGCTTATACGTGCGTTTTCGGTTCCTCTTTTCAAGAGAACATCTATTCAGCATCCTTCCTCCTCTGTGTCCCAATCTTTTGTTCCAAAACAGATCACGAGGGAATTGCCTCATGCATGcacgggggggggggtgtataaAAATGCCGGTCAAGACAGACTTGGGGCTTTTTCCGATTTTCCTGACTACTTTCATCTTCATTCATTTGCTttgctgtatttttcttttgcaacttcaaaataaaaaccttttcTTTTTGGCATCCCGGGTCGTTGACTGTC

Function

GO: NA

KEGG:

id description
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU237359 True 574 lncRNA 0.40 2 12319950 12326872

Neighbor

gene id symbol gene type direction distance location
LOC111195108 NA coding upstream 3216 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 168900 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 224661 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 326726 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 380853 11935660 ~ 11939097 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 347006 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 464351 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 469244 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 509858 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 701249 13028121 ~ 13029690 (+)
G175250 ints2,LOC107744627,LOC107699256 non-coding upstream 22631 12296792 ~ 12297319 (+)
G175249 ints2,LOC107744627,LOC107747027,LOC107693886,LOC107699256,LOC107578473 non-coding upstream 59130 12256594 ~ 12260820 (+)
G175237 NA non-coding upstream 100261 12219246 ~ 12219689 (+)
LOC111195040 NA non-coding upstream 102112 12214700 ~ 12217838 (+)
LOC111195036 NA non-coding upstream 130569 12187243 ~ 12189381 (+)
G175277 NA non-coding downstream 11941 12338813 ~ 12365939 (+)
G175284 NA non-coding downstream 20626 12347498 ~ 12348188 (+)
G175288 med13 non-coding downstream 25728 12352600 ~ 12353486 (+)
G175305 NA non-coding downstream 68541 12395413 ~ 12402354 (+)
G175340 NA non-coding downstream 238219 12565091 ~ 12565419 (+)
LOC103027177 tmem261,LOC103027177 other upstream 110501 12191356 ~ 12209449 (+)
G175108 NA other upstream 406494 11908872 ~ 11913456 (+)
G174994 NA other upstream 883420 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1300532 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1688185 10621028 ~ 10631765 (+)
rnft1 rnft1 other downstream 197269 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 412631 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 966426 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1026896 13353768 ~ 13418416 (+)
G175900 NA other downstream 1352487 13679359 ~ 13685563 (+)

Expression


Co-expression Network