rnft1 (rnft1)


Basic Information

Item Value
gene id rnft1
gene name rnft1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12524141 ~ 12540201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237430
tcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgggctctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggggcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataataatatttataataataataataataataataataataataataaatatattatttaaattttatgaggcataaaataataacaagaaaaaaaaacaagaaaatcgagaatcgaatcgaatcgtgaccctcaaatcgaaaatgaaatcgaatcgaggatttagagaatcgtgacacccctacagGACACACAtgaaattacgtagtaaacaaaaaaagtgttagtcttccacaatcccctgacctaaacccaactaagatggtgatttgggatgagctggatctttacagtgtgaagaaaaagcagcaactattgttcagcactttCAGGATCTCTTTCAAGACGCTAAGAAACCTATTCCAGGTGtctcataaagacactgagattaaaataccaagaatgTGCAGATATGTCCTTAACGACAAGTGTGGtgtttagaagaatctaaagtataaaatatattctggtttatcactttttgtttacaaaataattgtgtgtgtatttaattataaatttacaatgtagaaattaTAAAAAGAACTCTAGGACCAGGATTTGAGACCTGTATTCTAAAGTAATATTCTGGTGTGTTTAATTGCTCTGTTAATGCAGGTATAAGCTTTGTCTGCACCTAATCTTTATTTATAACGTttgtcatctttttttttcggATTATCAACATGAGGATCAGAACTGTGTGTCAACTATTATAAACCTAAAACAGCAGGAAACAGTCTTAGCCTTACCAAAATCTAATGTCAATGACGACTGTCCACAGTAGGCTTTAAGGTCAGAATGATGGAGACTACAGTAGAATAAGCAAACCAAAGCCAGTTAGtttcacaaaaaatgtgtaaacTAATTGTACTAATTTGATTAGTTGAGTGACACACATACACGAGCACCAACGTACGTAGAATGGCAATGGCTAAGATAAAATGCGACCTCTCTTGTCTGCAATTGTGGACAAAACAGCTCATGGAGTAAAGTGTGGGCATATTTTGCTTATATCTTTGATGAAGACAGGAACCAAACCAACACAACTAACCCATTTtacaaacagtgtttaaaatctCTCTAGTGCAAAGGAAGGAACACGAGCAACTTGGCTCAGCATTTGGTAAAGAAGCACCTTTACTGAGCTGAGAAGTTGTgagcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCtaaattatctattttttgtaGCTGcagttttattacattacattatgacGAATCTTTTTTCCATCATATCTGGTAAATTTGCAGAGAGGATAAAGTTGTCTCCTATAGAAGAGACACCATGTCTAATAACCAACACATAGCAACTCCCCACCCAAACTGTGCACATGTTTCCTTTTTAACTTGAGTTTGTTTAGAGGTCAGTGGGAATTCCTGGAAATGTCAAGAAGTTAAACCAAATGGTCCAGGTGCCTTGCTTACATGGaatgttattattaatgctATATGTCTTTCTTACAAATAATTTGTGCTCGGAAGTTGGGAAGCTTTATGTATCGAGATACATAGATGTTTATAAATGACTGCCATCATCAGCAAATGTATGCATATCAGTTTGCAATCAAAAGCTTATTATATTAACAATTCCATTTAAGTATGATGAAATAATTTCAGAACATAGCCTgaatgtttgttatttttctagtAACTTTTCAAGTGTTGTGCATACAGCTTTTGTATTACCTACAGAAGAAACCAAAGAATCTTAAATCTATTTTCCTAAAGATTTTTGTGTGCAACAAGCTGACCCCCccagattttttcaaatcaagaataaaa
>XM_007238996.3
taatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggagacttgacaggtatgggtaAAGCTGAGCTTTATTACGCTGGGCgaattgaaaattcatgaactATTATTTTGAAACAGCGGCGGACTGTCAGCCATGTTGGCCGCTGTGTGGATCGGATGTTTCGGATTCTTCAGCTGCTGGACAGACGGTGTTTCCGGGGGCGATTGGTTTAGAggtgtttgtgtttatctgtgaacagtatatatatatttttctcgtTGTTAATCCATTTTAAGCATCAAAGTTCTCTCGATGGAGATCAGCGGTTTGACATGAAACTCCGGCCTCAGTATGAAAGGAGAGCCTTTAACGTAAGTGAGTCCAGAAGAGGGTTAAAACCTGGGGAAACGACGGTAATGCCGACCGAACTGAACTCTCAGGATGGCAGCAGCGGTTTGTCACTAGCTTTGCAACCAGAGCACCTCAGCAGAACATCGGGGTCAGGAGCGGTTACCTCTCTGGAGCCCGGCGATGTCCGAGTGGCTGTCGGCAGCTCTGCGGCAGAGAGCAGTGGTGTACCAGCTTCACGGAGACCACGGTCCGGAGCTCACAGCCACGCTCACACTCATTCTCACGGCTCCGGGAGAGTTTACACACAGCCGTACCCCGAGGCGGAGCAGTCGGGCCACGAGCCGGACACAGGCGAGTCCAGCGCCTCATTCTCAGAGCTCCGCTACCTGTTCCGCTGGCTGCAAAAAAGTCTTCCTTTCATCGTGATTCTCAGTGCAAAACTCGTTATCCAGCACGCACTAGGGCTGGCTGTCGGAGTTGGTCTGTTTACGACTTTTCTTTATGTGAATAAAAACATTCAGACACAAGTTTTTCTGCAGGACCGACAGTCAAAGCTACAGTGTCTCTGGCTTCTCTCCTTCCTGATAGCCTCCTCCCTGCTTTTCTACTACGCATTTCAGGCGGAGTCACTTTACTATTGCCTCATCCTCGTCAACCCCCAAGTTGAACAGCTGGATTTCTGGGAGGTTTTGTGGGCTGTTGGAGTTACCAGTTTTACTGTAAAGTTTGTCTTCATGGGATTCAAGTgccttattcttcttcttccctCCCCTGTTATGGTACACAGAAGACGGGGTCAGTGGTATATGATGATAGAAGAGGTTAGTCAGGTATATCAAGTGATTGTACCTGTGCCTCCTTGGTTTCGGTATCTGGTCAGCTATCGGCAAGTGGGCAGTTCTGTGGACTTGACCCTGGGTGTTCTGCTAGCGCTGCTCTACCTTATTCTGAAGCTTTTGGGACTTTATGGTCAGTGGGGATCTCTGAAGAAAACAGTCCGAACCTTTCTCAGTTGTGAGGTAAATGGGGGCCCTGCCACTCTGTCTCAGTGCACAGAGGCTGGAGATACCTGCCCTATCTGTCAGTCTGACTTTAAGCAGCCTCGGGTCCTCCTGTGTCAAcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCtaaattatctattttttgtaGCTGcagttttattacattacattatgacGAATCTTTTTTCCATCATATCTGGTAAATTTGCAGAGAGGATAAAGTTGTCTCCTATAGAAGAGACACCATGTCTAATAACCAACACATAGCAACTCCCCACCCAAACTGTGCACATGTTTCCTTTTTAACTTGAGTTTGTTTAGAGGTCAGTGGGAATTCCTGGAAATGTCAAGAAGTTAAACCAAATGGTCCAGGTGCCTTGCTTACATGGaatgttattattaatgctATATGTCTTTCTTACAAATAATTTGTGCTCGGAAGTTGGGAAGCTTTATGTATCGAGATACATAGATGTTTATAAATGACTGCCATCATCAGCAAATGTATGCATATCAGTTTGCAATCAAAAGCTTATTATATTAACAATTCCATTTAAGTATGATGAAATAATTTCAGAACATAGCCTgaatgtttgttatttttctagtAACTTTTCAAGTGTTGTGCATACAGCTTTTGTATTACCTACAGAAGAAACCAAAGAATCTTAAATCTATTTTCCTAAAGATTTTTGTGTGCAACAAGCTGACCCCCccagattttttcaaatcaagaataaaaactgtttgatttaa
>XM_007238997.3
taatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggagacttgacaggtatgggtaAAGCTGAGCTTTATTACGCTGGGCgaattgaaaattcatgaactATTATTTTGAAACAGCGGCGGACTGTCAGCCATGTTGGCCGCTGTGTGGATCGGATGTTTCGGATTCTTCAGCTGCTGGACAGACGGTGTTTCCGGGGGCGATTGGTTTAGAggtgtttgtgtttatctgtgaacagtatatatatatttttctcgtTGTTAATCCATTTTAAGCATCAAAGTTCTCTCGATGGAGATCAGCGGTTTGACATGAAACTCCGGCCTCAGTATGAAAGGAGAGCCTTTAACGTAAGTGAGTCCAGAAGAGGGTTAAAACCTGGGGAAACGACGGTAATGCCGACCGAACTGAACTCTCAGGATGGCAGCAGCGGTTTGTCACTAGCTTTGCAACCAGAGCACCTCAGCAGAACATCGGGGTCAGGAGCGGTTACCTCTCTGGAGCCCGGCGATGTCCGAGTGGCTGTCGGCAGCTCTGCGGCAGAGAGCAGTGGTGTACCAGCTTCACGGAGACCACGGTCCGGAGCTCACAGCCACGCTCACACTCATTCTCACGGCTCCGGGAGAGTTTACACACAGCCGTACCCCGAGGCGGAGCAGTCGGGCCACGAGCCGGACACAGGGCTGGCTGTCGGAGTTGGTCTGTTTACGACTTTTCTTTATGTGAATAAAAACATTCAGACACAAGTTTTTCTGCAGGACCGACAGTCAAAGCTACAGTGTCTCTGGCTTCTCTCCTTCCTGATAGCCTCCTCCCTGCTTTTCTACTACGCATTTCAGGCGGAGTCACTTTACTATTGCCTCATCCTCGTCAACCCCCAAGTTGAACAGCTGGATTTCTGGGAGGTTTTGTGGGCTGTTGGAGTTACCAGTTTTACTGTAAAGTTTGTCTTCATGGGATTCAAGTgccttattcttcttcttccctCCCCTGTTATGGTACACAGAAGACGGGGTCAGTGGTATATGATGATAGAAGAGGTTAGTCAGGTATATCAAGTGATTGTACCTGTGCCTCCTTGGTTTCGGTATCTGGTCAGCTATCGGCAAGTGGGCAGTTCTGTGGACTTGACCCTGGGTGTTCTGCTAGCGCTGCTCTACCTTATTCTGAAGCTTTTGGGACTTTATGGTCAGTGGGGATCTCTGAAGAAAACAGTCCGAACCTTTCTCAGTTGTGAGGTAAATGGGGGCCCTGCCACTCTGTCTCAGTGCACAGAGGCTGGAGATACCTGCCCTATCTGTCAGTCTGACTTTAAGCAGCCTCGGGTCCTCCTGTGTCAAcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCta
>XM_015602943.2
taatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggagacttgacaggtatgggtaAAGCTGAGCTTTATTACGCTGGGCgaattgaaaattcatgaactATTATTTTGAAACAGCGGCGGACTGTCAGCCATGTTGGCCGCTGTGTGGATCGGATGTTTCGGATTCTTCAGCTGCTGGACAGACGGTGTTTCCGGGGGCGATTGGTTTAGAggtgtttgtgtttatctgtgaacagtatatatatatttttctcgtTGTTAATCCATTTTAAGCATCAAAGTTCTCTCGATGGAGATCAGCGGTTTGACATGAAACTCCGGCCTCAGTATGAAAGGAGAGCCTTTAACGTAAGTGAGTCCAGAAGAGGGTTAAAACCTGGGGAAACGACGGTAATGCCGACCGAACTGAACTCTCAGGATGGCAGCAGCGGTTTGTCACTAGCTTTGCAACCAGAGCACCTCAGCAGAACATCGGGGTCAGGAGCGGTTACCTCTCTGGAGCCCGGCGATGTCCGAGTGGCTGTCGGCAGCTCTGCGGCAGAGAGCAGTGGTGTACCAGCTTCACGGAGACCACGGTCCGGAGCTCACAGCCACGCTCACACTCATTCTCACGGCTCCGGGAGAGTTTACACACAGCCGTACCCCGAGGCGGAGCAGTCGGGCCACGAGCCGGACACAGGCGAGTCCAGCGCCTCATTCTCAGAGCTCCGCTACCTGTTCCGCTGGCTGCAAAAAAGTCTTCCTTTCATCGTGATTCTCAGTGCAAAACTCGTTATCCAGCACGCACTAGGGCTGGCTGTCGGAGTTGGTCTGTTTACGACTTTTCTTTATGTGAATAAAAACATTCAGACACAAGTTTTTCTGCAGGACCGACAGTCAAAGCTACAGTGTCTCTGGCTTCTCTCCTTCCTGATAGCCTCCTCCCTGCTTTTCTACTACGCATTTCAGGCGGAGTCACTTTACTATTGCCTCATCCTCGTCAACCCCCAAGTTGAACAGCTGGATTTCTGGGAGGTTTTGTGGGCTGTTGGAGTTACCAGTTTTACTGTAAAGTTTGTCTTCATGGGATTCAAGTgccttattcttcttcttccctCCCCTGTTATGGTACACAGAAGACGGCTTTTGGGACTTTATGGTCAGTGGGGATCTCTGAAGAAAACAGTCCGAACCTTTCTCAGTTGTGAGGTAAATGGGGGCCCTGCCACTCTGTCTCAGTGCACAGAGGCTGGAGATACCTGCCCTATCTGTCAGTCTGACTTTAAGCAGCCTCGGGTCCTCCTGTGTCAAcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCtaaattatctattttttgtaGCTGcagttttattacattacattatgacGAATCTTTTTTCCATCATATCTGGTAAATTTGCAGAGAGGATAAAGTTGTCTCCTATAGAAGAGACACCATGTCTAATAACCAACACATAGCAACTCCCCACCCAAACTGTGCACATGTTTCCTTTTTAACTTGAGTTTGTTTAGAGGTCAGTGGGAATTCCTGGAAATGTCAAGAAGTTAAACCAAATGGTCCAGGTGCCTTGCTTACATGGaatgttattattaatgctATATGTCTTTCTTACAAATAATTTGTGCTCGGAAGTTGGGAAGCTTTATGTATCGAGATACATAGATGTTTATAAATGACTGCCATCATCAGCAAATGTATGCATATCAGTTTGCAATCAAAAGCTTATTATATTAACAATTCCATTTAAGTATGATGAAATAATTTCAGAACATAGCCTgaatgtttgttatttttctagtAACTTTTCAAGTGTTGTGCATACAGCTTTTGTATTACCTACAGAAGAAACCAAAGAATCTTAAATCTATTTTCCTAAAGATTTTTGTGTGCAACAAGCTGACCCCCccagattttttcaaatcaagaataaaaactgtttgatttaa

Function

symbol description
rnft1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human RNFT1 (ring finger protein, transmembrane 1).

NR:

description
RING finger and transmembrane domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237430 True 2546 lncRNA 0.36 2 12535218 12540187
XM_007238996.3 False 2515 mRNA 0.44 9 12524141 12540201
XM_007238997.3 False 1777 mRNA 0.48 9 12524141 12539574
XM_015602943.2 False 2356 mRNA 0.44 8 12524141 12540201

Neighbor

gene id symbol gene type direction distance location
LOC111195108 NA coding upstream 207407 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 373091 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 428852 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 530917 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 585044 11935660 ~ 11939097 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 133677 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 251022 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 255915 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 296529 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 487920 13028121 ~ 13029690 (+)
G175305 NA non-coding upstream 121787 12395413 ~ 12402354 (+)
G175277 NA non-coding upstream 158202 12338813 ~ 12365939 (+)
G175288 med13 non-coding upstream 170655 12352600 ~ 12353486 (+)
G175284 NA non-coding upstream 175953 12347498 ~ 12348188 (+)
G175272 NA non-coding upstream 197269 12319950 ~ 12326872 (+)
G175340 NA non-coding downstream 24890 12565091 ~ 12565419 (+)
G175348 NA non-coding downstream 45730 12585931 ~ 12592035 (+)
G175350 NA non-coding downstream 54023 12594224 ~ 12594628 (+)
G175351 NA non-coding downstream 56437 12596638 ~ 12596837 (+)
LOC111195043 NA non-coding downstream 93479 12633680 ~ 12635793 (+)
LOC103027177 tmem261,LOC103027177 other upstream 314692 12191356 ~ 12209449 (+)
G175108 NA other upstream 610685 11908872 ~ 11913456 (+)
G174994 NA other upstream 1087611 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1504723 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1892376 10621028 ~ 10631765 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 199302 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 753097 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 813567 13353768 ~ 13418416 (+)
G175900 NA other downstream 1139158 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1258438 13798639 ~ 13889044 (+)

Expression


Co-expression Network