G175348


Basic Information

Item Value
gene id G175348
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12585931 ~ 12592035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237457
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacacacacatacacccatcttcacactacacacacactacacacatacacccatcgttacactacacacacacacacactacacccatctttacactacacacacacactacacactctctacacacatacacccatctttacaccacacacacacactacacacactctacacacatacacccatctttacactacacacacacacacacacactctacacacatacacccatctttacactacacacacacacacacatacacccatctttacacacacacacacacacaacacacaccacactacacacacacatacacccatctttacactacacacacacacacattacacacacacatacacccatctttacactacacacacacatacacccatctttacactacacacaccacac
>TU237459
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacactctacacacatacacccatctttacactacacacactacacacacacacacacacacacacacccatctttacactacacacacactacacagatACACccatctttacactacacacacacatacacccatctttacactacacacacacac
>TU237460
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacactctacacacatacacccatctttacactacacacactacacacacacacacacacacacacacccatctttacactacacacacactacacagatacacccatctttacactacacacacacatacacccatctttacactacacacaccacac
>TU237461
cacacacacacacacacacacacacactctacacacacacacacacacaacacacacactctacacacacacacacacactctacacacacacacacacacttacacaaactctacacacatacacccatcgttacactacatacacacacacacactacacacacacacacacacacacacacacatctttacactacacacacactacacacatacACCCATctttacactacacacacactacacacatacacccatctttacactacacacacactacacacatacacccatcttacactacacacacctacacacacactacacacatacacccatctttacactacacacacacacacatctttacactacacaaacacacccatctttacaccacactacacacacactacacacactctacacacatacacccatctttaaactacacacacatacacccatcgttacactacacacacacacacactacacccatctttacactacacacacacactacacactctctacacacatacacccatctttacaccacacacacacactacacacactctacacacatacacccatctttacactacacacacacacacacacactctacacacatacacccatctttacactacacacacacacacacatacacccatctttacacacacacacacacacaacacacaccacactacacacacacatacacccatctttacactacacacacacacacattacacacacacatacacccatctttacactacacacacacatacacccatctttacactacacacaccacac
>TU237462
acacacacacacacacacacttacacaaactctacacacatacacccatcgttacactacatacacacacacacactacacacacacacacacacacacacacacatctttacactacacacacacactacacagatACACCCATctttacactacacacacacacacaacacacacacacatacacccatcttcacactacacacacactacacacatacacccatcgttacactacacacacatacacccatctttacactacacacacacaacacacacacacacccatctttacactacacacacactacacacatacacccatcTTTAca
>TU237463
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacacacacatacacccatcttcacactacacacacactacacacatacacccatcgttacactacacacacactacacacacacacacccatctttacactacacacacactacacacacacacACCCATctttacactacacacacactacacacatacacccatctttacactacacacacactacacacatacacccatctttacactacacaaacacacccatctttacaccacactacacacacactacacacactctacacacatacacccatctttaaactacacacacacactacatacacacact
>TU237464
acacacacacacacacacacttacacaaactctacacacatacacccatcgttacactacatacacacacacacactacacacacacacacacacacacacacacatctttacactacacacacacactacacagatACACCCATctttacactacacacacacacacacaacacacacacacatacacccatcttcacactacacacacactacacacatacacccatcgttacactacacacacatacacccatctttacactacacacacacaacacacacacacacccatctttacactacacacacactacacacatacacccatcTTTAca
>TU237465
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacactctacacacatacacccatctttacactacacacacacacacactacacccatctttacactacacacacacactacacactctctacacacatacacccatctttacaccacacacacacactacacacactctacacacatacacccatctttacactacacacacacacacacacactctacacacatacacccatctttacactacacacacacacacacatacacccatctttacacacacacacacacacaacacacaccacactacacacacacatacacccatctttacactacacacacacacacattacacacacacatacacccatctttacactacacacacacatacacccatctttacactacacacaccacac
>TU237466
acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacactctacacacatacacccatctttacactacacacacacacacactacacccatctttacactacacacacacactacacactctctacacacatacacccatctttacaccacacacacacacactacacacactacacacatacacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237457 False 483 lncRNA 0.44 4 12587853 12592035
TU237459 False 217 lncRNA 0.44 2 12587853 12590188
TU237460 False 218 lncRNA 0.44 2 12587853 12592035
TU237461 True 839 lncRNA 0.44 7 12585931 12592035
TU237462 False 335 lncRNA 0.43 2 12587248 12588223
TU237463 False 374 lncRNA 0.43 6 12587853 12590654
TU237464 False 337 lncRNA 0.43 2 12587248 12588223
TU237465 False 452 lncRNA 0.44 3 12587853 12592035
TU237466 False 212 lncRNA 0.44 2 12587853 12590424

Neighbor

gene id symbol gene type direction distance location
LOC111195108 NA coding upstream 269197 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 434881 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 490642 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 592707 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 646834 11935660 ~ 11939097 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 81843 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 199188 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 204081 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 244695 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 436086 13028121 ~ 13029690 (+)
G175340 NA non-coding upstream 20512 12565091 ~ 12565419 (+)
G175305 NA non-coding upstream 183577 12395413 ~ 12402354 (+)
G175277 NA non-coding upstream 219992 12338813 ~ 12365939 (+)
G175288 med13 non-coding upstream 232445 12352600 ~ 12353486 (+)
G175284 NA non-coding upstream 237743 12347498 ~ 12348188 (+)
G175350 NA non-coding downstream 2189 12594224 ~ 12594628 (+)
G175351 NA non-coding downstream 4603 12596638 ~ 12596837 (+)
LOC111195043 NA non-coding downstream 41645 12633680 ~ 12635793 (+)
G175368 NA non-coding downstream 67435 12659470 ~ 12660283 (+)
G175356 cltc non-coding downstream 111579 12703614 ~ 12708778 (+)
rnft1 rnft1 other upstream 45730 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 376482 12191356 ~ 12209449 (+)
G175108 NA other upstream 672475 11908872 ~ 11913456 (+)
G174994 NA other upstream 1149401 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1566513 10832168 ~ 11019418 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 147468 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 701263 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 761733 13353768 ~ 13418416 (+)
G175900 NA other downstream 1087324 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1206604 13798639 ~ 13889044 (+)

Expression


Co-expression Network