LOC111195043


Basic Information

Item Value
gene id LOC111195043
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12633680 ~ 12635793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237488
CCGCGCGGTAGCGCAcaaggcacactagatgcgctgcagcagcagttcagttcagcgagtctttagcacagcacgcacggcaacagataggcttcttctccaccgtgtcccaccagccaggcCATAAAACAGCACGGGACGGAGGCGCAGGTAGAGGACAGAGGAGGGGATGgggggagaagaagaagagaagggaGCGAAGCATTGGAATAACGGTTTCCACACAGCACACTGCTTGTTTGCCCTCGCTGTCATTCCATGGTGGAAAAACTCGCTGAATTATGTCAGCAGCTGTGAAGCCCATAAAACAGCAACCCCACTTTTTTGACAATGGCCGTCTGCTCCCGCCGCCAACCCAGAGGCCTTAGCCGTTCGATAATGGAAACAAAATAGCGGACATTCTTGCGGCAGGCCGCAGAAACCGAGGCCATGCAATAAAGACAGGCGGGATCACTAGTAAAGTGTACACACATTCAAACGGGGGAAAGGCACGGCCAATTCCCCCATGGTGGGAGAGAATGAGGATTTGGCAACCCCTGCTTAGGCTCTGTGAACTGGCAACTGGCTTTTTGGTAATGCTGAATGACctaataaacagaaaatgaaaataaa
>XR_002651436.1
gcaacagataggcttcttctccaccgtgtcccaccagccaggcCATAAAACAGCACGGGACGGAGGCGCAGGTAGAGGACAGAGGAGGGGATGgggggagaagaagaagagaagggaGCGAAGCATTGGAATAACGGTTTCCACACAGCACACTGCTTGTTTGCCCTCGCTGTCATTCCATGGTGGAAAAACTCGCTGAATTATGTCAGCAGCTGTGAAGCCCATAAAACAGCAACCCCACTTTTTTGACAATGGCCGTCTGCTCCCGCCGCCAACCCAGAGGCCTTAGCCGTTCGATAATGGAAACAAAATAGCGGACATTCTTGCGGCAGGCCGCAGAAACCGAGGCCATGCAATAAAGACAGGCGGGATCACTAGTAAAGTGTACACACATTCAAACGGGGGAAAGGCACGGCCAATTCCCCCATGGTGGGAGAGAATGAGGATTTGGCAACCCCTGCTTAGGCTCTGTGAACTGGCAACTGGCTTTTTGGTAATGCTGAATGACctaataaacagaaaatgaaaataaacatatgAAATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237488 True 612 lncRNA 0.52 2 12633680 12635779
XR_002651436.1 False 547 lncRNA 0.51 2 12633759 12635793

Neighbor

gene id symbol gene type direction distance location
LOC111195108 NA coding upstream 316946 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 482630 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 538391 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 640456 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 694583 11935660 ~ 11939097 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 38085 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 155430 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 160323 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 200937 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 392328 13028121 ~ 13029690 (+)
G175351 NA non-coding upstream 36843 12596638 ~ 12596837 (+)
G175350 NA non-coding upstream 39052 12594224 ~ 12594628 (+)
G175348 NA non-coding upstream 41645 12585931 ~ 12592035 (+)
G175340 NA non-coding upstream 68261 12565091 ~ 12565419 (+)
G175305 NA non-coding upstream 231326 12395413 ~ 12402354 (+)
G175368 NA non-coding downstream 23677 12659470 ~ 12660283 (+)
G175356 cltc non-coding downstream 67821 12703614 ~ 12708778 (+)
G175372 cltca non-coding downstream 74521 12710314 ~ 12711384 (+)
G175378 cltc,LOC107693955 non-coding downstream 96289 12732082 ~ 12738872 (+)
G175384 btg3 non-coding downstream 122440 12758233 ~ 12760229 (+)
rnft1 rnft1 other upstream 93479 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 424231 12191356 ~ 12209449 (+)
G175108 NA other upstream 720224 11908872 ~ 11913456 (+)
G174994 NA other upstream 1197150 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1614262 10832168 ~ 11019418 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 103710 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 657505 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 717975 13353768 ~ 13418416 (+)
G175900 NA other downstream 1043566 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1162846 13798639 ~ 13889044 (+)

Expression


Co-expression Network