G175372 (cltca)


Basic Information

Item Value
gene id G175372
gene name cltca
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12710314 ~ 12711384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237495
CCTGGTAGTAGTTGATTAGCTCTTCCAGTTCATCTGCATGGACCACGATATGAAGGCCGCACATCTGAGCCAGTCTGAACTCCTTGCCGTCTACACAGGCAAAGCACCTCCTTCCATGTACGTGTGCTATTAGCTTTGCGAGCTCCATCCACCGCAGCCTGGTATTCTCCGAGGTGAACCAAAGTGGAAGCCAGGCGGCCAAAGTTCGACACATTGTTGTAGAGTAACTTTGCAGCCTCGTACATCTTCTCATCATAACAACGATCaccaacCTGCTGGATGTGGGCATTGTTAGGACCATTAATGAACTCTTCCAGCTCAGCCAGTCGGTTGGTTTTGGCAAGAGCAAAGATCAGCTCCGTCTCCACATAGGACTCTCTCGCCTTTTTACGAGCCATCTGCAGGAACTTCACCAAGTCCTCCCAGTTAACTCTGATCAGCTGCCTGCACCACCTCCATATAAGCAGAGGGGTCATCAGCCTTAATGTAGGAATCGATGGCCTCTTTGACCAGGCCTTTCTGGAGCTGAGCCTTAGCCAACTGGCTCCACACAGCTGGCTCGTTGCAGCGCTCCGCAAACTCGTACGCTCGGTCCAGGTTACCAATGTGTTCGATCAGAACCTGTAGAATGGGAAT

Function

symbol description
cltca Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly; mitotic cell cycle; and receptor-mediated endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin complex. Predicted to be active in clathrin-coated endocytic vesicle and spindle. Is expressed in axial vasculature; blood; intermediate cell mass of mesoderm; notochord; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 56. Orthologous to human CLTC (clathrin heavy chain).

NR:

description
Clathrin, heavy polypeptide a (Hc)

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237495 True 636 lncRNA 0.51 4 12710314 12711384

Neighbor

gene id symbol gene type direction distance location
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding upstream 18181 12673878 ~ 12692133 (+)
LOC111195108 NA coding upstream 393580 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 559264 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 615025 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 717090 11988169 ~ 11993224 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 79839 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 84732 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 125346 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 316737 13028121 ~ 13029690 (+)
LOC103041695 LOC108412888 coding downstream 327566 13038950 ~ 13040433 (+)
G175356 cltc non-coding upstream 1536 12703614 ~ 12708778 (+)
G175368 NA non-coding upstream 50031 12659470 ~ 12660283 (+)
LOC111195043 NA non-coding upstream 74521 12633680 ~ 12635793 (+)
G175351 NA non-coding upstream 113477 12596638 ~ 12596837 (+)
G175350 NA non-coding upstream 115686 12594224 ~ 12594628 (+)
G175378 cltc,LOC107693955 non-coding downstream 20698 12732082 ~ 12738872 (+)
G175384 btg3 non-coding downstream 46849 12758233 ~ 12760229 (+)
G175388 NA non-coding downstream 159398 12870782 ~ 12872646 (+)
G175641 NA non-coding downstream 184738 12896122 ~ 12896464 (+)
G175644 NA non-coding downstream 187495 12898879 ~ 12899168 (+)
rnft1 rnft1 other upstream 170113 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 500865 12191356 ~ 12209449 (+)
G175108 NA other upstream 796858 11908872 ~ 11913456 (+)
G174994 NA other upstream 1273784 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1690896 10832168 ~ 11019418 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 28119 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 581914 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 642384 13353768 ~ 13418416 (+)
G175900 NA other downstream 967975 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1087255 13798639 ~ 13889044 (+)

Expression


Co-expression Network