G175378 (cltc,LOC107693955)


Basic Information

Item Value
gene id G175378
gene name cltc,LOC107693955
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12732082 ~ 12738872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237504
CTTGTTTACTAATAAATAGAGCAGGATAAAGAAGACAGGCTTGAACTAAATGGATCAGTGCTTTCCATTTGTGTTTGCAGATCAATCTAACAGGACCAGAATCAATTAACTGTCCCATTTACTGGCCAGGTTTTGAGAAGTGTAGATATTTTCTTTCCAATAAACGAAAAAACCCAAACAACCCTCAAACAAACACATTACCTCACACGTAAAACAGCACAAACATCTTAGATAACatcctctctcaccctctcaaATACACAAGTATACGCCCAGTCATACAGATGCACTCCCACAGGAAGAGCTTTCCGGTAGGGTGTGTGTTCTGATTCTaatctcccctctctctcccccccatTTGCATACCTTGTCCTCTTTGAGCCATTTCTCCAACAGCTGTTTGCGGCCCTGCTGCAGGACGGGCCTGCAGAGCTCCAGTGACTCAAACTTGTTGAGCTGGCCCTGGTCCAGTAAGATTCCAAAATACTGCAGCAGAGGAGAGGTCTGGCCTGGCTGAGCCGGCACGCTCTGAAAGCGCCGGATGGTGTCCGGAGTACGCAGAATCCCCTTTGGAGCATTGGCAGCCACTTTGGCAGCTTCAGAGTAGTTGCCCCCAGCAAACAGGTTGTTGAACTTGCGGGCGAATAGCTCCTCAGCTCCGGCCAGGTTGTTCCTTACAGCCATCCTCAGGGCCAGGTCCGGGTTCTGCAGAACGTTGGTGATGTAGGGGATGATGTTCTCCTCCTCGACACACACTGACAAGACCTGTCCTTTCCTGTTGACGCCTATGATCCCAGAAGTGGCCTCATAAGGAGCCGTAACAAAAATGGTCTCGCCACTAATTCTGTTCATGTAGATGCAGGTGCCCGTCTCCAGGTCATAGAGGTGGATGTAGCCATACTTGGTGATGAGGAACACTACGTCCTGTTTGGGGCTGATCTGCATGGCCACTGGAAAGTCATTCTGAGCCTCAGGAGGGAAGAACACGTCCACGGCTTTCTTTGGAAAAGGCTGATTACCAGTCGGTGGTGTTCCTACTTCAATTATATGAAGCT
>TU237507
cacgaggggaaaaaaacatgtggaacactgtaatagtattattacaGCTTATCCAATCATTTTTACCAAAATCTAACTACAAcacaaccacaaaaaaaatctatgaaatGTAAACCGAAATGGCATCATTATAGATTTGTGCAAGAGAGAGTAATATACATACTGGCAAGCATTTCATGATTCATATGCATACCTGTCCTTTCCTGTTGACGCCTATGATCCCAGAAGTGGCCTCATAAGGAGCCGTAACAAAAATGGTCTCGCCACTAATTCTGTTCATGTAGATGCAGGTGCCCGTCTCCAGGTCATAGAGGTGGATGTAGCCATACTTGGTGATGAGGAACACTACGTCCTGTTTGGGGCTGATCTGCATGGCCACTGGAAAGTCATTCTGAGCCTCAGGAGGGAAGAACACGTCCACGGCTTTCTTTGGAAAAGGCTGATTACCAGTCGGTGGTGTTCCTACTTCAATTATATGAAGCT

Function

symbol description
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

NR:

description
PREDICTED: clathrin heavy chain 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237504 True 1055 lncRNA 0.49 4 12732082 12738872
TU237507 False 483 lncRNA 0.42 2 12737996 12738872

Neighbor

gene id symbol gene type direction distance location
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding upstream 39949 12673878 ~ 12692133 (+)
LOC111195108 NA coding upstream 415348 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 581032 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 636793 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 738858 11988169 ~ 11993224 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 52351 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 57244 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 97858 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 289249 13028121 ~ 13029690 (+)
LOC103041695 LOC108412888 coding downstream 300078 13038950 ~ 13040433 (+)
G175372 cltca non-coding upstream 20698 12710314 ~ 12711384 (+)
G175356 cltc non-coding upstream 23304 12703614 ~ 12708778 (+)
G175368 NA non-coding upstream 71799 12659470 ~ 12660283 (+)
LOC111195043 NA non-coding upstream 96289 12633680 ~ 12635793 (+)
G175351 NA non-coding upstream 135245 12596638 ~ 12596837 (+)
G175384 btg3 non-coding downstream 19361 12758233 ~ 12760229 (+)
G175388 NA non-coding downstream 131910 12870782 ~ 12872646 (+)
G175641 NA non-coding downstream 157250 12896122 ~ 12896464 (+)
G175644 NA non-coding downstream 160007 12898879 ~ 12899168 (+)
G175645 NA non-coding downstream 160739 12899611 ~ 12900020 (+)
rnft1 rnft1 other upstream 191881 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 522633 12191356 ~ 12209449 (+)
G175108 NA other upstream 818626 11908872 ~ 11913456 (+)
G174994 NA other upstream 1295552 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1712664 10832168 ~ 11019418 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 631 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 554426 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 614896 13353768 ~ 13418416 (+)
G175900 NA other downstream 940487 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1059767 13798639 ~ 13889044 (+)

Expression


Co-expression Network