G175550 (rnft1)


Basic Information

Item Value
gene id G175550
gene name rnft1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12524280 ~ 12525437 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237712
caCACTGATTAAACCACACAGGAATAAGTACAGTTGGAGTGTCTGATTAGTACAGTTACCTAGTGCGTGCTGGATAACGAGTTTTGCACTGAGAATCACGATGAAAGGAAGACTTTTTTGCAGCCAGCGGAACAGGTAGCGGAGCTCTGAGAATGAGGCGCTGGACTCGCCTGTGTCCGGCTCGTGGCCCGACTGCTCCGCCTCGGGGTACGGCTGTGTGTAAACTCTCCCGGAGCCGTGAGAATGAGTGTGAGCGTGGCTGTGAGCTCCGGACCGTGGTCTCCGTGAAGCTGGTACACCACTGCTCTCTGCCGCAGAGCTGCCGACAGCCACTCGGACATCGCCGGGCTCCAGAGAGGTAACCGCTCCTGACCCCGATGTTCTGCTGAGGTGCTCTGGTTGCAAAGCTAGTGACAAACCGCTGCTGCCATCCTGAGAGTTCAGTTCGGTCGGCATTACCGTCGTTTCCCCAGGTTTTAACCCTCTTCTGGACTCACTTACGTTAAAGGCTCTCCTTTCATACTGAGGCCGGAGTTTCATGTCAAACCGCTGATCTCCATCGAGAGAACTTTGATGCTTAAAATGGATTAACAacgagaaaaatatatatatactgttcacagataaacacaaacaccTCTAAACCAATCGCCCCCGGAAACACCGTCTGTCCAGCAGCTGAAGAATCCGAAACATCCGATCCACACAGCGGCCAACATGGCTGACAGTCCGCCG

Function

symbol description
rnft1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human RNFT1 (ring finger protein, transmembrane 1).

NR:

description
RING finger and transmembrane domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237712 True 735 lncRNA 0.53 2 12524280 12525437

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 55598 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 217597 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 385491 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 443649 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 536366 11957424 ~ 11987914 (-)
LOC103039067 cltc coding upstream 167428 12692865 ~ 12753715 (-)
btg3 btg3,LOC102786047 coding upstream 232789 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 238751 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 252574 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 482380 13007817 ~ 13011654 (-)
G175535 NA non-coding downstream 57822 12461377 ~ 12466458 (-)
LOC111195041 NA non-coding downstream 83419 12434739 ~ 12440861 (-)
G175532 NA non-coding downstream 89594 12433115 ~ 12434686 (-)
G175531 NA non-coding downstream 94506 12427614 ~ 12429774 (-)
G175530 NA non-coding downstream 97136 12422143 ~ 12427144 (-)
G175566 NA non-coding upstream 41279 12566716 ~ 12567007 (-)
LOC103046834 NA non-coding upstream 50931 12576368 ~ 12581737 (-)
G175573 NA non-coding upstream 58854 12584291 ~ 12585272 (-)
G175555 NA non-coding upstream 72210 12597647 ~ 12600254 (-)
G175553 NA non-coding upstream 75769 12601206 ~ 12605433 (-)
G175119 NA other downstream 592526 11827807 ~ 11931754 (-)
G175072 NA other downstream 880648 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1064250 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1120579 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1852799 10661604 ~ 10671481 (-)
G175583 NA other upstream 97774 12623211 ~ 12623555 (-)
G175647 NA other upstream 371603 12897040 ~ 12898630 (-)
G175707 NA other upstream 463500 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 477950 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 726720 13252157 ~ 13254568 (-)

Expression


Co-expression Network