G175555


Basic Information

Item Value
gene id G175555
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12597647 ~ 12600254 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237721
ctgcatgAAAATcctttttgttacatttttacaatgtaTCTAATAAGTGCACTATTTCAGAAATTTAACAAGGTATATTTAGTATACTGTGGAACAGATACAGACTGTTGGGTAACATTTGAGGTACAGGAAATCTATCTATAGAAACAGCAAAATTAAAATGAGCAAAACTGTGAATAGCCTAAAATAACAGCAGTCGTTTGAGTAAATGGTAAAGCCCCATAGTTAGCAGAGGTAAAATCAAGTCTAAGAAAACCTGTTTAAATCCAGTTTATTCCCAACTGTTGATGGAGttaaaaaactgagaaaaacttCTTTATCAAGAGTTATAATgaagtttattttcatacattttatcTGCCAAACATTGCAAAGATGTGATTGTGTGCTTGTTTTCTAAAAAGCCAGAGGTTCTCTGTGATATGTGCTGCAGGCTAAAGATTAAGGGGGCACAAGACTTCCATGTTGTGTCTAATCTTAGTGATCTgatattttgtctttattttaatctaGTTTTCCTCTTTAATCTGCAGTAGTGCTGAGACCTCCTGTGCCAGTGCTCTCAGGggaggaacaaaaaaaaaatgtgaaaacagaTGATTACTGGAAGCACTTCCTCGCTCTATCGCTGGGAATTAGTGTCAAACCATGCATGATTTGACATTACTGTAGTAATTCTTCTGGCAGCCTTTGATCTCCTATTTAAGAGCATTTGCTAGTTAAAGGTAGAGGTTAGCTCTTTTTCCAGTCTCTCGAgatgattattgattatcataATGAAAGGATTCCTCATGTGGCCGCTGGGCCTGAATGAGATGTTTGAAccctttttttctcctgttgATGTCtgatttgtgtgtctgtgtgtatttgtaaatgtctgtgtctgttcttgtgtgtgtgctgttccCACACATATAGTTGCTTgtgtttgtaaatatataccGTTTTTGATACTAGAGTATTTCAGCTTCGTAATTTGAGTTGTTCCTGTTCATGTAAAGGCCACTGTATGAGTGCCCTGCACACTGCATCAGAATAGGCCTGCTATAATCTATGCAGGGGCATAGATTACTGCCCAAAAGGTACTTTGTAACTGAATGGCACAGGAACCATAGAGAGGGAACACTAGaggaaaaaaactgtatttccaTTAGACAAGCCCTCCTGCTGTCCAGAGGGACACCTTTAAGAAGACTGAATTATCACATTATCAGAACTAAACAAATGCAGATGACCCTCTGTTTCCTTCTGAAAGGACATTCCACAAATAGTAGTGGGGGTCAGGAAAGACCCTTAAGAATGAATGTCAATGACAGGCGAGGATGACATGCAGAGGTAATCTGACAGAACATGACTGACTGAGAGGACGAAGGGGGCGGCACGATCATGGGGGTGAAAAGAGAAGGGAAATTGGCATCACTGAAACAACCAGTTCTGAGAAGGGAGACAGAGTAATGGATACGTTTACAGCagtgttcctgttcctgtttcTAGCTAATGCGAGAAATACACGTAGAAATCAGCACACAGTGAATAACATTACCCCTAAAGGCTTTAGAAATTAAATCAATAGGTACCCTAACTAATCTGATACACAAATGTCTGCTACTTTGCAGTTCATGCCAAATTGTTAATTGGAAAATAACTGACATGCTACTGTTTTTGTTCATGTACGGCATCACAGTAATGCTGAACACGAAAACGGGTAACGTTACtcatttggacgtactttactGGCATGCCTGATTTAATCCTTTTTTCTTACTTCTGAGAAAGAGGGAATGACGTTGTATAGTGACCTAAGGAACAGTCATCCAACAAAGAGCTGCATTGAGTTTAAATGCTCTATATAAATCACGATGGAACCTCTTAACCTAACAGGTACACACAGTTAGACGATGAGGTTGGACCCAAGTATACCTCTCTGTTGTGAtttaagtgttattttattcaaaagcaTGATTAAAAGAGAAGGAAGTGAGAAAATCCCTTCATTGTTCTGGGTTGTGTGATTGTGTTGAGACTAAATGGACAAATGACAAATCAGCAGATGGGCAAATGAGTCACCCGATAAGTGGATGTTTTTTTCTCATGGGGCTGGACAGAATGACACACAAACCTATTCAGAATCTTCAAAATGGTGGCTCTGAAGATAATGTCCTTCTGGTTCATGACTCTGCTTTTCTGGTGACTTGCCTTCATGACTCAACTTTCAGCATAGAAATACCAAAAACCCAGCTAGCTAGCTGATGACTTGTTTTAGTGTTTGcctttcagagttttttttttttttcagttgcagcTGGTAGCATACTTTGTGCACTTTTTTCCAAAGCCTTAATGttttgacttctctttgtattttcaaatttgtaaagcactttgaatgactgttgtgtatgaaaggtgctatgtAAAGGAACTTACCTTGCCTTGCCTAATTGATGGAGTTAAGTGActaaatatttgcattttgaAATACGTCTTAAGTCCAGggatgtacctgatcagctgtTAAATATCTGTATGGACCAAATTAATGAAGCACATGAAACTGCCTTTCTGAAATAAGGAACTTCTGAATGGCTGGGGTGTTTGAGCAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237721 True 2608 lncRNA 0.38 1 12597647 12600254

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 128965 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 290964 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 458858 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 517016 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 609733 11957424 ~ 11987914 (-)
LOC103039067 cltc coding upstream 92611 12692865 ~ 12753715 (-)
btg3 btg3,LOC102786047 coding upstream 157972 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 163934 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 177757 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 407563 13007817 ~ 13011654 (-)
G175573 NA non-coding downstream 12375 12584291 ~ 12585272 (-)
LOC103046834 NA non-coding downstream 15910 12576368 ~ 12581737 (-)
G175566 NA non-coding downstream 30640 12566716 ~ 12567007 (-)
G175476 NA non-coding downstream 37653 12518023 ~ 12559994 (-)
G175550 rnft1 non-coding downstream 72210 12524280 ~ 12525437 (-)
G175553 NA non-coding upstream 952 12601206 ~ 12605433 (-)
LOC103047042 NA non-coding upstream 5790 12606044 ~ 12645567 (-)
G175578 NA non-coding upstream 12901 12613155 ~ 12613413 (-)
G175606 NA non-coding upstream 100059 12700313 ~ 12703161 (-)
G175611 NA non-coding upstream 146534 12746788 ~ 12794710 (-)
G175119 NA other downstream 665893 11827807 ~ 11931754 (-)
G175072 NA other downstream 954015 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1137617 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1193946 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1926166 10661604 ~ 10671481 (-)
G175583 NA other upstream 22957 12623211 ~ 12623555 (-)
G175647 NA other upstream 296786 12897040 ~ 12898630 (-)
G175707 NA other upstream 388683 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 403133 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 651903 13252157 ~ 13254568 (-)

Expression


Co-expression Network