G175573


Basic Information

Item Value
gene id G175573
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12584291 ~ 12585272 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237742
tgatgattattattttaatattaagtcAGTAATAAGGGCGGGTCATATCATGgacatgtattattatattaaactaaattgTTGCTGCTTGATATAAAAGAACAATAATTACTCTATTCTCCCATGTCATATCTTTAATATTGGATACACAAAGGGGATTATTGATGTCATGACAAGTTGAATCATTGACGTTTTGTGAAATCTGTTGAAAttccatgtatttttttaatatcacaataaatacagaaaatatgtatcctaaacatatttttgttgGTTACCTTTTAGTAATTTACTGTGTATTATGAAGTCTACcagttcatttttatatatcagTAAATTTTAGCTGCAAATCTTCATCTATGTAGAATGTATATCGTAATACATTATACGTAGAATTTGCATTTCACTGAGGACCGTGAAAGTCCACACTATCCCACTGCACTAGAGCTTTGCCTAATCGGCCAGTGGACGTTTTCGCTTCCTGCTGGGGTGCCGAATGGGCAAGTGGATCGATATGTGCAGGAAAGGAAAGGCACTACAGGATGGACattggcatcagcagcagctcactgTATCACTTCttcccctacacacacacacacacccacctcCTTGTCTTTTAATCCATGCAAGGTGCAGCATTAACTTATTTTTAGGGTTAATTAGGCCATTTTAATTGAACTATCTGTCTTCATTTTGCAGTTTTAGAAATTGATGGCTTGACCTGCATAACAATGCTGCAGTctgctgcattgtttaaatattggGCATAAAAATATGGCTATTAGCTGACATATTACACACTTTATAAGTGTATGCAAGGATTGGTTGGTGGGTGCGAATGATTGCTGTAGACCACTGAACAGGGGAGAATCAAAGCTGGGCCTATCCAACATACATTCTTGGAATACATTTATTGTACTCCTACTTTTGGAAGGTGCTGAAGTATCAGCACCTTTATTGTAGGTTTTTCCCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237742 True 982 lncRNA 0.36 1 12584291 12585272

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 115609 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 277608 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 445502 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 503660 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 596377 11957424 ~ 11987914 (-)
LOC103039067 cltc coding upstream 107593 12692865 ~ 12753715 (-)
btg3 btg3,LOC102786047 coding upstream 172954 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 178916 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 192739 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 422545 13007817 ~ 13011654 (-)
LOC103046834 NA non-coding downstream 2554 12576368 ~ 12581737 (-)
G175566 NA non-coding downstream 17284 12566716 ~ 12567007 (-)
G175476 NA non-coding downstream 24297 12518023 ~ 12559994 (-)
G175550 rnft1 non-coding downstream 58854 12524280 ~ 12525437 (-)
G175535 NA non-coding downstream 117833 12461377 ~ 12466458 (-)
G175555 NA non-coding upstream 12375 12597647 ~ 12600254 (-)
G175553 NA non-coding upstream 15934 12601206 ~ 12605433 (-)
LOC103047042 NA non-coding upstream 20772 12606044 ~ 12645567 (-)
G175578 NA non-coding upstream 27883 12613155 ~ 12613413 (-)
G175606 NA non-coding upstream 115041 12700313 ~ 12703161 (-)
G175119 NA other downstream 652537 11827807 ~ 11931754 (-)
G175072 NA other downstream 940659 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1124261 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1180590 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1912810 10661604 ~ 10671481 (-)
G175583 NA other upstream 37939 12623211 ~ 12623555 (-)
G175647 NA other upstream 311768 12897040 ~ 12898630 (-)
G175707 NA other upstream 403665 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 418115 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 666885 13252157 ~ 13254568 (-)

Expression


Co-expression Network