G175644


Basic Information

Item Value
gene id G175644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12898879 ~ 12899168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237840
TTTGGTCCCCgctgtttatttacaattacaCACTTTTAGGTATTGGTACAAATGACATTGAAACAATGTGCCTAATTactagtgagtaaatatgtgaGTGCAAATAAATTTTGTAATGCAGGTGTTACAAAGGAAGAAATCTGTGGATCAAAACACTAGCCTGATTTGGAGCGCTGTCAGCAGATGGGCTGGATGACATCACCTCCTGGCCCGCTCCTCTGTCAGCCACCCCTCCTTTTTGCCTTTTCTCTCCTCCCATTTTACAGACAGGCATcaggaaaggagaaaaa

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237840 True 290 lncRNA 0.42 1 12898879 12899168

Neighbor

gene id symbol gene type direction distance location
ubl3 ubl3,LOC107741158 coding upstream 28647 12836730 ~ 12870232 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding upstream 89710 12796116 ~ 12809169 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding upstream 104686 12791223 ~ 12794193 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding upstream 206746 12673878 ~ 12692133 (+)
LOC111195108 NA coding upstream 582145 12314732 ~ 12316734 (+)
LOC103046100 NA coding downstream 128953 13028121 ~ 13029690 (+)
LOC103041695 LOC108412888 coding downstream 139782 13038950 ~ 13040433 (+)
LOC103047014 NA coding downstream 199458 13098626 ~ 13099926 (+)
LOC103041997 NA coding downstream 225331 13124499 ~ 13126067 (+)
LOC103047318 NA coding downstream 244955 13144123 ~ 13146834 (+)
G175641 NA non-coding upstream 2415 12896122 ~ 12896464 (+)
G175388 NA non-coding upstream 26233 12870782 ~ 12872646 (+)
G175384 btg3 non-coding upstream 138650 12758233 ~ 12760229 (+)
G175378 cltc,LOC107693955 non-coding upstream 160007 12732082 ~ 12738872 (+)
G175372 cltca non-coding upstream 187495 12710314 ~ 12711384 (+)
G175645 NA non-coding downstream 443 12899611 ~ 12900020 (+)
G175665 NA non-coding downstream 154531 13053699 ~ 13183048 (+)
G175671 NA non-coding downstream 165060 13064228 ~ 13069701 (+)
G175763 NA non-coding downstream 385769 13284937 ~ 13285718 (+)
G175771 NA non-coding downstream 413886 13313054 ~ 13315228 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 153826 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 358678 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 689430 12191356 ~ 12209449 (+)
G175108 NA other upstream 985423 11908872 ~ 11913456 (+)
G174994 NA other upstream 1462349 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 394130 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 454600 13353768 ~ 13418416 (+)
G175900 NA other downstream 780191 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 899471 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 948094 13847262 ~ 13868855 (+)

Expression


Co-expression Network