G175665


Basic Information

Item Value
gene id G175665
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13053699 ~ 13183048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU237899
ggatttttctcttttgactGAATGTTGCTCAGTGCTGTTTTCTGGGTGTTTGAGAAGGCGGGGGTGGTGCTCATCACAGGAGTTTTGACCCTCAGAGACAGGGTCCTCTGCAACAGTACTGTGAACATCATCTGAACCAGAGCACTTCATTAGGAGAGTCTCAGATGAGAGACTGTGTTTGGTCCAGCTGTCGGTCGATGGCTGGACTGCGTCTCTACCGGACCTGCTGTGATTGAAATGTTACAGCACTGGTCCAGGAAACTGGTTTCAGATCTGGAAGAACTGAGCGATCAGAGACCGCTTCAGACAGCACCTGCTCAACCATCAACACCACCCACccccatcagccaatcagcccaGTGGATCCACCCCTCAGCCTGAGCCAGCAACAGAGACactttaggacacttaaggactgtctgctgtgttcatgaaggacacagtgctgaacaacatcatgataagaacttgttgctcagacaggctggagcgTCATTAAACGTCATTAATACTGGACAACATGCTGTTAACTGGACTCTGCTGACGTAATCATATTGATAAGTTCTGTCCAATCACGTCATTTGCATAAATGTATAACAGCTAGGATGAAGTCTGAGGAATTCTCTCTGGCCCTCGACTGGCTTTagtttctttctatttctttctctctctctctctctctctctctctctctctctctctttctctctctctctctctttctctctctctctctttctctctaggtTGTGAATGTGTTGATCTATCGAGATTTTATTACACTATGTGTTGACTCG
>TU237900
ggatttttctcttttgactGAATGTTGCTCAGTGCTGTTTTCTGGGTGTTTGAGAAGGCGGGGGTGGTGCTCATCACAGGAGTTTTGACCCTCAGAGACAGGGTCCTCTGCAACAGTACTGTGAACATCATCTGAACCAGAGCACTTCATTAGGAGAGTCTCAGATGAGAGACTGTGTTTGGTCCAGCTGTCGGTCGATGGCTGGACTGCGTCTCTACCGGACCTGCTGTGATTGAAATGTTACAGCACTGGTCCAGGAAACTGGTTTCAGATCTGGAAGAACTGAGCGATCAGAGACCGCTTCAGACAGCACCTGCTCAACCATCAACACCACCCACccccatcagccaatcagcccaGTGGATCCACCCCTCAGCCTGAGCCAGCAACAGAGACGTGagaccagatttttttttatttttatgcctgtttactttttttttcattaaaaggagtgattttatttaatttttgatgtttatgcctcatgtagaaaatgtttggttaaactttaaatctggTGGTGACTCAAATTATGACtgttttacctttcttttaaaaaaaaaaaaaaaagggaggttttagttttttttgatgaattaaaaataatatctagttcaggaaaaaaaaaaaaataaatctttaatttcATTGTAAACAGTAGCCAAACATGGTTGCTGGGCAGATTAATACATTAGAGGCCTATCACACATTGGCCCTCAATTTTCactggaaagtttttttttggtttacattatgtaatttatgttgCCTAATGACTATgatttgtataaaacatttttttaaaaacaatcatCTCCATTAAGGCTTATGTAAGGGAAGTTGTTTACTGGCTTTTgacaaaattaatacatataaactCAGATGTAGTTGTAACTAGCTAAAGTAACCAAGCATGCTGGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237899 False 797 lncRNA 0.47 2 13053699 13062086
TU237900 True 926 lncRNA 0.38 2 13053699 13183048

Neighbor

gene id symbol gene type direction distance location
LOC103041695 LOC108412888 coding upstream 13266 13038950 ~ 13040433 (+)
LOC103046100 NA coding upstream 24009 13028121 ~ 13029690 (+)
ubl3 ubl3,LOC107741158 coding upstream 183467 12836730 ~ 12870232 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding upstream 244530 12796116 ~ 12809169 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding upstream 259506 12791223 ~ 12794193 (+)
LOC111195044 NA coding downstream 2629 13185677 ~ 13189917 (+)
LOC103047635 NA coding downstream 32261 13215309 ~ 13216319 (+)
LOC103021350 LOC108412888 coding downstream 37925 13220973 ~ 13222688 (+)
LOC103042312 LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535 coding downstream 59201 13242249 ~ 13243689 (+)
LOC111195046 LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535 coding downstream 67302 13250350 ~ 13251550 (+)
G175645 NA non-coding upstream 153679 12899611 ~ 12900020 (+)
G175644 NA non-coding upstream 154531 12898879 ~ 12899168 (+)
G175641 NA non-coding upstream 157235 12896122 ~ 12896464 (+)
G175388 NA non-coding upstream 181053 12870782 ~ 12872646 (+)
G175384 btg3 non-coding upstream 293470 12758233 ~ 12760229 (+)
G175763 NA non-coding downstream 101889 13284937 ~ 13285718 (+)
G175771 NA non-coding downstream 130006 13313054 ~ 13315228 (+)
G175779 NA non-coding downstream 149673 13332721 ~ 13336148 (+)
G175824 NA non-coding downstream 200241 13383289 ~ 13384619 (+)
G175810 NA non-coding downstream 203184 13386232 ~ 13388819 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 308646 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 513498 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 844250 12191356 ~ 12209449 (+)
G175108 NA other upstream 1140243 11908872 ~ 11913456 (+)
G174994 NA other upstream 1617169 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 110250 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 170720 13353768 ~ 13418416 (+)
G175900 NA other downstream 496311 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 615591 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 664214 13847262 ~ 13868855 (+)

Expression


Co-expression Network