LOC103044870


Basic Information

Item Value
gene id LOC103044870
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13252157 ~ 13254568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238017
CTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctT
>TU238019
CTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGaacaagacattgTTTCTGTGAACTACAAACGAACAGAAGcgttagagcagtgtttctaaaccctgttcctgcatattctactttATATTCCCACTGTTCCGCATATTCTAgtgctttctctgctttaaaggcacttaataagATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctT
>TU238020
CTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGGTGAGTCAGAATCTGCAGATATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctT
>TU238021
GATAGGAAGTGGGAAGGCTCTGAGCTTCCGGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctT
>XM_007235426.3
GGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGGTGAGTCAGAATCTGCAGATcagaacaagacattgTTTCTGTGAACTACAAACGAACAGAAGcgttagagcagtgtttctaaaccctgttcctgcatattctactttATATTCCCACTGTTCCGCATATTCTAgtgctttctctgctttaaaggcacttaataagATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA
>XM_007235427.3
GGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGaacaagacattgTTTCTGTGAACTACAAACGAACAGAAGcgttagagcagtgtttctaaaccctgttcctgcatattctactttATATTCCCACTGTTCCGCATATTCTAgtgctttctctgctttaaaggcacttaataagATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA
>XM_007235428.3
GGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGGTGAGTCAGAATCTGCAGATaacaagacattgTTTCTGTGAACTACAAACGAACAGAAGcgttagagcagtgtttctaaaccctgttcctgcatattctactttATATTCCCACTGTTCCGCATATTCTAgtgctttctctgctttaaaggcacttaataagATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA
>XM_015601936.2
GGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGGTGAGTCAGAATCTGCAGATATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA
>XM_022681078.1
GGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGtgctttctctgctttaaaggcacttaataagATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA
>XR_001518319.2
CGGTCCACACTTGAAATTCTTCCCCACTGactctgttatatatgtgttgtGGTAAACTCGGACCCCAGGTCAATTTATACATGTGGATGTCTGCCTAGCTAATTAATGTCCTGAACGTTATTATTAACACAGTACCTCTCACTGAGTCGGTGCTCTGTTCAGTCAGCTGTTCAGCGCGATCTGAACCAAAATGGCATCTCCCCCTACACCCTCACCCCATGACCGCAGCAGACCAGAAGATGAAAATGATCCAGTGGAACAGATGATTTTAAGGACAGGCTGTGCAAACCTGCATTATGCACTCCAGGATTGTATGGCagagcaccaagactggagaaAATGCCAAACACAGGTCAAGGACTTCAAAGATTGCATGACGTCATACCAAAATGTTCAGAAAGCTCGGTTGTTGAAGCAAAGACCATCAGAGTCGGACTCAAAAAGTCAATTGACAGCCTCTGATTAAGAAATTGTTAATGCATAATGATGTAACTTTAGcctgttaaatttacattgtgGACAGTTCACCATTGATGTTATTTACTTTACTTGTGGAacatcaaataaaacatttctcctTAAGATTTA

Function

GO: NA

KEGG:

id description
K18177 COA4; cytochrome c oxidase assembly factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU238017 False 562 lncRNA 0.42 2 13252165 13254522
TU238019 False 704 lncRNA 0.41 3 13252165 13254522
TU238020 False 582 lncRNA 0.42 2 13252165 13254522
TU238021 False 608 lncRNA 0.43 2 13252165 13254568
XM_007235426.3 True 752 mRNA 0.41 3 13252157 13254539
XM_007235427.3 False 729 mRNA 0.41 3 13252157 13254539
XM_007235428.3 False 749 mRNA 0.41 3 13252157 13254539
XM_015601936.2 False 607 mRNA 0.42 2 13252157 13254539
XM_022681078.1 False 618 mRNA 0.41 3 13252157 13254539
XR_001518319.2 False 588 misc_RNA 0.42 2 13252157 13254540

Neighbor

gene id symbol gene type direction distance location
LOC103041391 LOC108439213 coding downstream 232668 13017526 ~ 13019489 (-)
LOC103040161 NA coding downstream 240503 13007817 ~ 13011654 (-)
uspl1 NA coding downstream 463176 12778011 ~ 12788981 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding downstream 483199 12764188 ~ 12768958 (-)
btg3 btg3,LOC102786047 coding downstream 490531 12758226 ~ 12761626 (-)
LOC107197005 NA coding upstream 12106 13266674 ~ 13267839 (-)
LOC103021997 NA coding upstream 21399 13275967 ~ 13277821 (-)
f9 NA coding upstream 74426 13328994 ~ 13337460 (-)
LOC103031773 NA coding upstream 179996 13434564 ~ 13439104 (-)
htatsf1 htatsf1 coding upstream 185093 13439661 ~ 13450272 (-)
LOC111195045 NA non-coding downstream 53196 13197213 ~ 13198961 (-)
G175715 NA non-coding downstream 69478 13052910 ~ 13182679 (-)
G175703 NA non-coding downstream 75866 13175235 ~ 13176291 (-)
G175716 NA non-coding downstream 82034 13168809 ~ 13170123 (-)
G175714 NA non-coding downstream 182625 13065640 ~ 13069532 (-)
G176017 NA non-coding upstream 129019 13383587 ~ 13384524 (-)
G176043 NA non-coding upstream 309238 13563806 ~ 13564134 (-)
G176069 NA non-coding upstream 485028 13739596 ~ 13740266 (-)
G176099 NA non-coding upstream 613238 13867806 ~ 13868388 (-)
G176145 NA non-coding upstream 795263 14049831 ~ 14050301 (-)
LOC111195039 NA other downstream 245096 13003387 ~ 13007061 (-)
G175707 NA other downstream 255223 12988937 ~ 12996934 (-)
G175647 NA other downstream 353527 12897040 ~ 12898630 (-)
G175583 NA other downstream 628602 12623211 ~ 12623555 (-)
G175119 NA other downstream 1320403 11827807 ~ 11931754 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other upstream 150713 13405281 ~ 13407280 (-)
G176058 NA other upstream 417204 13671772 ~ 13674482 (-)
LOC111195111 NA other upstream 492068 13746636 ~ 13748650 (-)
tex14 NA other upstream 520235 13774803 ~ 13814510 (-)
G176146 LOC108415819 other upstream 796994 14051562 ~ 14051961 (-)

Expression


Co-expression Network