G175997


Basic Information

Item Value
gene id G175997
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14277728 ~ 14278568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238349
CtatactgtaaatgagggtcacacTCATTGATATAATAAATTTGTAAGTGTTAAATGACATTTATGGTTTACTGTAGGGGTGTCGAAACTACGGCCTGCAGGCCATTTTTcggcccatttccttttttagaaTGGCCCGTGacgtatttaaaaaataaaatatcaggtTTTTATAATCTGAGATTCGAGGTTTAAACACTAGGTGTCGCTATGACATAAACCCAATCTAAAACGCTCCTCatcttctttccttcctttatTATGTTCCTgagcatagactgtatataaagatggacgccgtgtcgccgttcccattcattcaatgaaaatgaagccaaaatcttccgccattttggcgattctgagaccagagtctgcgcagtagagaccagaggagggagaaagactgtggagagctccaaatcatttaaataaccccgcccctgagggctgcctcgcggtcacaggctgcggagcggagctgacggtctgttattggtcccacccataaccagcccttttacaataaccacacctgttttgaatagagctgaataacgttttaaaaaacaaactctgtgagaaaataaaaatgtgacaatataagcagaggttacactagctgctgcatttaaataatggaggtagaattacagtatattagaaataaacgtgattaaaagttgtctgttttgccattgaaacctatgggggtgggtggggttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttgagagacgatgctctgtccagctatatacagtctatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238349 True 821 lncRNA 0.43 2 14277728 14278568

Neighbor

gene id symbol gene type direction distance location
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 30069 14244212 ~ 14247659 (+)
trim37 trim37,LOC107691657,LOC107577452 coding upstream 147038 14101949 ~ 14130690 (+)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding upstream 179035 14082474 ~ 14098693 (+)
kctd7 kctd7,LOC108415927,LOC107588867,LOC107686134,LOC106603469 coding upstream 200492 14071214 ~ 14077236 (+)
LOC111195113 NA coding upstream 357111 13913928 ~ 13920617 (+)
mogat2 mogat2 coding downstream 38837 14317405 ~ 14331559 (+)
dgat2 dgat2,LOC107746984 coding downstream 61840 14340408 ~ 14352188 (+)
uvrag uvrag,LOC108413435,LOC108411119 coding downstream 77728 14356296 ~ 14506004 (+)
LOC111195050 NA coding downstream 444415 14722983 ~ 14729064 (+)
LOC103022111 LOC103022111 coding downstream 640291 14918859 ~ 14921856 (+)
LOC103042124 NA non-coding upstream 34585 14142167 ~ 14243143 (+)
G175984 NA non-coding upstream 53029 14178804 ~ 14224699 (+)
G175966 NA non-coding upstream 106657 14114094 ~ 14171071 (+)
G175946 NA non-coding upstream 348611 13920530 ~ 13929117 (+)
LOC111194981 NA non-coding upstream 348611 13926240 ~ 13929117 (+)
G175999 NA non-coding downstream 5659 14284227 ~ 14286973 (+)
G176000 NA non-coding downstream 6734 14285302 ~ 14288274 (+)
G176010 NA non-coding downstream 257700 14536268 ~ 14536547 (+)
G176216 NA non-coding downstream 391716 14670284 ~ 14670678 (+)
G176258 NA non-coding downstream 560942 14839510 ~ 14917161 (+)
LOC103039555 LOC108415819 other upstream 208366 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 388684 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 408873 13847262 ~ 13868855 (+)
G175900 NA other upstream 592165 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 859312 13353768 ~ 13418416 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 1515696 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 2542367 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 2764267 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 3860144 18138712 ~ 18174518 (+)
G177219 NA other downstream 3945705 18224273 ~ 18226133 (+)

Expression


Co-expression Network