LOC111195111


Basic Information

Item Value
gene id LOC111195111
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13746636 ~ 13748650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238467
CGAGTAGGGTAAAGCTGCAGACCCGGAGACTGCAGTTTTAGGACCGCTGCAGATTCAGGACCGCTGCAGTTCTAGGACCCTACTCTGCCGCCTAGCGACATGAGTGATTATTACACAGTAGGCGGGACCagcgagagagggagtgagtggGGTGCAGGTGTATGCTAAAGGCTTTTCTCCTCATAGCTGTTGTCGTCGTCGAATTGTGTGGCACAGTTTGGTGCACGATGGAGTACAGTCGGAATATGCATATAACAATTCAAGAGGGTCGAGCTATGCCTAAACTGGAAAGATGCACCACATGCTGCAAAAAGTTCCACTGCCCATTTTGCTCTTCATCTTTGTTCAACCCAACAAAGTTAAGCAAAGTCAAAACCCATTTAGAAAGCCATTTCAGCCGAGCTGTTTTCCAAAAAGaaGTCGTTGCG
>XM_022681545.1
GGGTAAAGCTGCAGACCCGGAGACTGCAGTTTTAGGACCGCTGCAGATTCAGGACCGCTGCAGTTCTAGGACCCTACTCTGCCGCCTAGCGACATGAGTGATTATTACACAGTAGGCGGGACCagcgagagagggagtgagtggGGTGCAGGTGTATGCTAAAGGCTTTTCTCCTCATAGCTGTTGTCGTCGTCGAATTGTGTGGCACAGTTTGGTGCACGATGGAGTACAGTCGGAATATGCATATAACAATTCAAGAGGGTCGAGCTATGCCTAAACTGGAAAGATGCACCACATGCTGCAAAAAGTTCCACTGCCCATTTTGCTCTTCATCTTTGTTCAACCCAACAAAGTTAAGCAAAGTCAAAACCCATTTAGAAAGCCATTTCAGCCGAGCTGTTTTCCAAAAAGAGTACACCATTCACAGATGTGGATTAAAGTGCAGACCACAATTGCATTACCATTGTATCCACTGCCAGTCAACGCTGTCACGTAAAGCAGACTTCATTAAACATGTGTCCTTGTGCAAGGAGAAGGACTCTTCTGTACCCCACATCCCAGCTAAAACTAACcccaccacccctgctccaaaAACCACCACAACCCCTGCTCCAAATACgaccaccacccctgctccaacaaccaccaccacccctgctccaaatacgaccaccacccctgctccaacAACCACCACCATTCCTCAACCAtcaccacccctgctccaataa

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0044782 cilium organization biological_process
GO:0030030 cell projection organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238467 False 428 lncRNA 0.49 3 13746636 13748650
XM_022681545.1 True 731 mRNA 0.50 4 13747136 13748644

Neighbor

gene id symbol gene type direction distance location
LOC103021466 NA coding downstream 19490 13717862 ~ 13727146 (-)
LOC103047751 LOC108276801,LOC107728853,LOC107577624,LOC107686144 coding downstream 31489 13594436 ~ 13715147 (-)
LOC103034318 LOC103034318 coding downstream 173845 13543955 ~ 13572791 (-)
LOC103032814 LOC108444522,LOC107701105,LOC107718794 coding downstream 210036 13509334 ~ 13536600 (-)
LOC111195110 NA coding downstream 265499 13453260 ~ 13481137 (-)
mdh2 mdh2,LOC107588934,LOC107691667 coding upstream 7594 13756244 ~ 13764183 (-)
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding upstream 186376 13935026 ~ 13938274 (-)
ppm1e ppm1e,LOC102780278 coding upstream 393524 14142174 ~ 14222311 (-)
rad51c rad51c coding upstream 480907 14229557 ~ 14244100 (-)
zbtb21 zbtb21 coding upstream 500018 14248668 ~ 14257220 (-)
G176069 NA non-coding downstream 6370 13739596 ~ 13740266 (-)
G176043 NA non-coding downstream 182502 13563806 ~ 13564134 (-)
G176017 NA non-coding downstream 362112 13383587 ~ 13384524 (-)
LOC111195045 NA non-coding downstream 547675 13197213 ~ 13198961 (-)
G175703 NA non-coding downstream 570345 13175235 ~ 13176291 (-)
G176099 NA non-coding upstream 119156 13867806 ~ 13868388 (-)
G176145 NA non-coding upstream 301181 14049831 ~ 14050301 (-)
G176147 LOC108415819,LOC107588830 non-coding upstream 309518 14058168 ~ 14058447 (-)
G176148 LOC108415819 non-coding upstream 314144 14062794 ~ 14063219 (-)
G176150 kctd7,LOC106603469,LOC108415927 non-coding upstream 327696 14076346 ~ 14080087 (-)
G176058 NA other downstream 72154 13671772 ~ 13674482 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other downstream 339356 13405281 ~ 13407280 (-)
LOC103044870 NA other downstream 492068 13252157 ~ 13254568 (-)
LOC111195039 NA other downstream 739575 13003387 ~ 13007061 (-)
G175707 NA other downstream 749702 12988937 ~ 12996934 (-)
tex14 NA other upstream 26153 13774803 ~ 13814510 (-)
G176146 LOC108415819 other upstream 302912 14051562 ~ 14051961 (-)
G176136 LOC108415819 other upstream 314850 14063500 ~ 14066144 (-)
G176138 NA other upstream 321099 14069749 ~ 14072684 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 908620 14657270 ~ 14670670 (-)

Expression


Co-expression Network