G176134 (rabgef1,LOC107734461)


Basic Information

Item Value
gene id G176134
gene name rabgef1,LOC107734461
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14096250 ~ 14098678 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238550
TTATTAACAGGGCAATTGCAGATTTTCACAGACAACACAACAATTccagtgacttttattttataaatgaatgaattaaaaatgttacatcTCCTCACAAATAAGCAAATCTTTAAGATGAAACCCAACATTAGCTTTAAATGATTTTAGTGTTTGTGCACCTGTTAGTACTAAAAATCAgtgtaaacacaaaacaacctgATCAACCCTCTGCGTTTCAGTCGCGAATGACCGTAATTAGTGATCATTTTTGTTACTTGGTGATAAGGCTATGAGTAAATTTGTGTTAAAGGAGATATTtattgaaaaactaaaaaaaacaaatgttaatgACTGACCCCAGATTCAGACGTAAACCTGAGATGATTGCTATCTGACGTGAGATTCTTTAGTTTGCGACatgagatgctaggctaacattTCTAACAAACACTGGGCTTGTACTGTCATTAAGCTTATCTCCGTAGACAGCCAAATTATCTTGGTAAATGCTacataaaatctgtttttttttttgtttgtttttttttttaacatgacttTATAACATTGGCATTGACATTATTTGGAGTCATATTTCAAGTGTCTAAGAACAAGATCTCTGTGCTTAGTGGGTGGATCTTCTGACAAGCACCCAAATGGAGTTCAGCTGTAAGCTGTAGTGGACGAACTTGCACTAACCTAGAAGTCAAACCATAAACCACATTAATTTATCATGGATGTTTTAAGCCACATCTCctattgtaaattaaaaaaataacatgtcAGATATCAAGAGTATCTTAAAACTGAATTGctacttttaaagcttttactCTATTACAGCTATTAGCCATACTCTCTGCTCATTTCTGCAGTACAGATTTTGCAATGCTTCGATATATAAATTAACCCCATAACCAAtaagtgtgtttactgtgtgctGTTGGAATTCTAATCAATCAAGTGGATGTTCTGCTGAATATGTTTACACACTCATCTACACTCTGTAGTTATTGTAACAGCACAGGACAAACTATACATCATGTGTTAAATCTGTAACTAGTGTTTACTTAGGTGTACACCCACACCACAGTACATTATTActagagtaaaatatattagtatttaaaaaaaagtaccatATCTACTCCTGAAGTAATACCAATATCAATGAATCAATATTTCACGATTTCAAGCATTGATAAAGAATACAAAGTCCCTTAAAAGTAGTCAAAGGAAGAAATGTAATGTTAGAGCAGCAAAACGTGTGAATACACCCTCAAAAACcattttttaaagctaaaactaccaattaacataatttacaaaATTATTACTTGTGATATCAACTGGTGATTGATGATGTTAATCATTTATCACTTGTTTATGAACTGAAATAAGCATAAATAAGATGCACTTTACTCAATTCAAATGTGCACACAATATATTACACCAAGCATACTATGATCCAAATTTGATAGGTCAGAACTCTATTAGACAAACCAGAACATGTTCTAAGGTATTAGACCAACCAGAACACATTCTAAAGTATTAGATCACAAATAACACGTTCTGAAATAATCAGAACAAgcaaataaatgtgtaaataacatacatatatttaaattaattaaaattcagCACATGTTCAGTGCATCTGTTAAAGCTACAGGTCAGAAGTCCACAGCCACGCTGAAGGCAAACAGCAAGTTAACTAAACTGAGCTAATCAGAAAGGTTATAAACTAATGTAATGTGACTGTTTCTTTGCAGTGTGTTCTTCTGTGGGCCTGTAGTTGCTGCTCACTTGTAACAGCAATGCTACCAAACTTAACGATAAAAAAAGTTTGCCTTGCAATCGCCAAAAAATCAAAGTGCAAAAGTGGAGAGGAAtgatacacaaacaaacatccTCTAAATCCAAATTGCGCCTGCAGAATGAAGGCCATTTAAAAAATCCCAAATATCCACCAAATAAGCCATActaatgctaacagctaacactAATACATCCTTAAAGCTCATGCTAGCCAGCAAACACCTGCGGCTGCAGCGGTGGAGGAAGCCTGTCGTTTTCTACGTTTTCAGCGTCTATGGCTGAAGCCCGTGGTTTAATCTCCAGAGGGAATTTCTCCAGGATTTCCTGAACTTCCTGAGTCACACTGTCCTGCCACTCGTTCAGTTCTGTCTGCAGGATCAGTGCTCCATCCAAAACCTGCTGCTGCCGCTTCTCCAGAGTTGACAGCATGTCCAGATTGTGGTGTAACTGGCTGATTAAGGGGTTGACGCTGGAGCTGGGGTGCGTCCAAGAGTCGGCATCGTCCTGCCTCCGTGGAGACACCTGGCCAGACATGTAGCGCTCAAAATCTTCCGGGCTCAGGTTTAGAGACTGAGCATCCAGCTTTTCAATAAAT

Function

symbol description
rabgef1 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

NR:

description
PREDICTED: rab5 GDP/GTP exchange factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238550 True 2395 lncRNA 0.36 2 14096250 14098678

Neighbor

gene id symbol gene type direction distance location
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding downstream 157976 13935026 ~ 13938274 (-)
mdh2 mdh2,LOC107588934,LOC107691667 coding downstream 332067 13756244 ~ 13764183 (-)
LOC103021466 NA coding downstream 369104 13717862 ~ 13727146 (-)
LOC103047751 LOC108276801,LOC107728853,LOC107577624,LOC107686144 coding downstream 381103 13594436 ~ 13715147 (-)
LOC103034318 LOC103034318 coding downstream 523459 13543955 ~ 13572791 (-)
ppm1e ppm1e,LOC102780278 coding upstream 43496 14142174 ~ 14222311 (-)
rad51c rad51c coding upstream 130879 14229557 ~ 14244100 (-)
zbtb21 zbtb21 coding upstream 149990 14248668 ~ 14257220 (-)
LOC103043578 LOC108411121 coding upstream 187260 14285938 ~ 14314833 (-)
LOC103045094 NA coding upstream 594002 14692680 ~ 14714840 (-)
G176139 rabgef1,LOC107734461,LOC107728875,LOC107577469 non-coding downstream 6135 14087099 ~ 14090115 (-)
G176150 kctd7,LOC106603469,LOC108415927 non-coding downstream 16163 14076346 ~ 14080087 (-)
G176148 LOC108415819 non-coding downstream 33031 14062794 ~ 14063219 (-)
G176147 LOC108415819,LOC107588830 non-coding downstream 37803 14058168 ~ 14058447 (-)
G176145 NA non-coding downstream 45949 14049831 ~ 14050301 (-)
G176154 NA non-coding upstream 3204 14101882 ~ 14106078 (-)
G176179 NA non-coding upstream 174790 14273468 ~ 14274362 (-)
G176184 NA non-coding upstream 220043 14318721 ~ 14352127 (-)
G176203 NA non-coding upstream 473332 14572010 ~ 14572473 (-)
G176248 NA non-coding upstream 629660 14728338 ~ 14728932 (-)
G176138 NA other downstream 23566 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 30106 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 44289 14051562 ~ 14051961 (-)
tex14 NA other downstream 281740 13774803 ~ 13814510 (-)
LOC111195111 NA other downstream 347600 13746636 ~ 13748650 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 558592 14657270 ~ 14670670 (-)
LOC111194989 NA other upstream 1429618 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1681877 15780555 ~ 15790644 (-)
G177526 NA other upstream 4073171 18171849 ~ 18174525 (-)
G177568 NA other upstream 4298904 18397582 ~ 18403008 (-)

Expression


Co-expression Network