G176150 (kctd7,LOC106603469,LOC108415927)


Basic Information

Item Value
gene id G176150
gene name kctd7,LOC106603469,LOC108415927
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14076346 ~ 14080087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238571
AGTAGAACAATAATGCAGTACAAACATTAGAATTCAACACATTTACACTAGAGTGCAAGTAGTCCTGCATCAAGATTCCCTCCAGCAAAAACACCCAcgtccacacagacacagaaagagagaacagagagagaaagaataaagagaaagtgagagaaagaaacagagagagataaaaaaatagagatacatagagagagagatagaaacagagatacatagagagagagagatagaaatagagatacatagagagagagagagagagagagagagagacagagagagaaatggagatagatagatagatagagaggggaGAATAAGGTCAGAGTAGTCTGGATGGTGTTGAGTAAAGTGAAGCTGATGCAGTGCTGAGAGCTCATGCTACGTTACGGCCTTCACAGCCCTCAAAGCGGCTTTAGGTGATAAAGATCCAATCACTACAGCTGAACTGATTTAGGGCTGTCACAATTACTCAGTAAAActcaatacattaaaatatcatatatcataaatTACTATTTACATTTCCTTAACATAACATTAGTCAGCAGTTAGCATGAAGCTAATGCATATTTTACATGACATTAcacagatttatatatttacaaaatcgGTAAATACTGTGTGAATCCTATAAATACACTCCCAGTGACCCATTTGGATCCCTGGGTTtctagaaaataaaaatcacttcAGTGACagacaaacaatacaaataaatattaacaaTTCTTTTTCCTTCCCAATATTGTATTAGTTTCAATATAATTCTTAGTTTTAACAACATATCTGGAAGTaagttataataaaaatgtaaaatattgtattaaaacaaaagaacaaagtgGTAGTATATTGCACAACttaaaaatatgtagtaaaactatatagtatactataaatatatagtaatgCACAGCAACGTGTACATATTCCTCATTCATTTAAGCCATTTTAACATTCGGCCTGTTTTAAAactaattattcattaattagtttactatttactatattcataattaatttaattgatgGTGACAGCCCTAAACTGTTCCTAAGTGTTTATGAaagtgaagttttttttctggtgctcCTGAATAAGGCATGAGCTACAAAAGTGAATAAATCTGAGGATTAGCAGCCAGCAGCAGTCTGTTTGCTTTAGACCAGAGTAAACACAAGGGTACCTTAACTTCAATAAGGCTAACAGTCCAGTTATTCAGTAATATACTCTTTAgttcacaatttaaaaaaatattatacagaTTATACAGATTTATTCCAAAACAAACTATAATGACACTGAGGATGAATCTTTAACCTTtccactaaacaaacaaacagcagtaTATGTAGAATGATTGTAGCAGTTTATAAGTTAGCTCGTGAGCCTGCACGCCTCAGACAGAGCTTTTGGTTGTGAAATATGAATGTGGTTGTTTGGTATGTCTGGATAGGCAGCAGAATTAAAGAAATTTGTCTGAAATAATCTCTTCACATTCTGCCCACTACTGTGTTCTCCCTTAGCTGCAGTTGTGAGATTGGATCAGCTTTAATGACTGAAAATCCCACTCAAACTTCAACAACCGGTGGTTGATTCCCCAGCTGGGCAAGAAGATCccactacaccaataagagtccatAGGCAACACTATATGTTACTGTGTAACATGAttcaaatgctgtaaatgtaataagATCAAATTTGCCCAACTTTGTtcacaaataaagaacaaacaaTAACAATTCATAAACAAATCCAGTTAATCTAGCCCTGACAggctaaaaacacaaacacagggcATAAAGACTCAGCACTGACCCAGCTGAAGAATGATATACACAACACTGTTTAACAAGAGTCTTACTCCAGATACCGAGaataagacaaaacaaaacaacaccaACTAAAATGAAAGCACTATTGGAGCTGAAttagatttatgttttttttttgtatttgaagAGATTAATTTTTTAACTCAGTATGAacctgcagtgttttttttacaatatagtcTCATGATAAACTAAAAAAGCTCAAACAGTGCttaatttcaaataaattaaatcatcactcaaaaaaaggaattattacagatacataaaataattactcTTGGATTCTTAACAAAAATTCAGGCAGCCTTCATTACCTCAATACCTACAGTTATTTACACAAAGAACTCTTAATCCCATCACGGTTCTGCCCaacaaagtaaaataatgttttataaagttTCAATTGTTGATTTGCAACAATTTCCTGTGTTAAAGGCTAGGCGGGTTCATTTAGAGGAAATAATATcatgtgtaaatatttgtaacaatagctaaaattaaataaactatacaATAAATAGTTTTATATGAAAAACGCCCTTTACAATCTTGAACTGTTCAActgcaaacagcaaaaaagaagaagagcatTCCAACCTTTGCAGTGAATATAAGGAAGCTTCTACATGAACACAACCTGCTGCAGTTACACTCTCAAAAATGTTGTATTCATTATAAACCACTATATGTCTGTCAAAGTCTGCATAATTAGAATGCTATTCGCTTTAGAAGCTCTTTAAGCTACCTAACAGTGATGCACTTTGGCTAGGATAAGACtgcccccccaaaaatgaattTTGGCATATCTTGATTGTATACAGTttggacagaaataaaacaaaataaaataataagaaaatttTGCAAGTTGGATCCACACCACATTTGATCTGAAACATGATGTGCGTGTGCGGGTTCAACAGTGTTACTATGTAGTTACTGAAGCCGCTTATTGTTACCTCATTAACCCATTTCCCACACAAATCCAATCTGATCGCTTGCGAATTTGAGTGCAGATCTGATATAAGAAACATAACCTTTCATATGTGGTGTTAAATCTCACTCATTTGATTCCTGGCATAAGGTAAGAATCACTCCACACAAAAGTGAACCATTAGATCAAGACAGATCAGATCTTAAACAATGAGGTGTGTAATGTGAGCATAGCCTTGTTCTGTGTGAGTGATTATAACACCTTAATAACACACTTCATTCAGCTGACCACATTACAGCACCAGCGTAGTTATGAGGGTTGAGGGGATGATTTCTGGCACTCTGATCATATTCCGGTTATGCCACAGTACTGAGCACTCACACGTGTTTGGCATAAGGTAAATGTGTTGCAGTGCAGCTtcaacacaccagttttgagagTGTACTGTGCTTCACCACCAGGTGATTTTAAACTCGTAGATAGGCCGTTTGCAGTAGTAGTGGTTAATGAGATGCTTGTCGCACACTCCGATGCACTGCTGGTCTGCTGTGATGCCACGGTCAGCCAGGTCGCTCACGATGCAGTGCAACAGGTCGTACACGTCCGCCACTGCCTCCCACGGCCCAAATGATACGTCCACCTCGCAATGATGCTCAAACAGCTTAGCCTCGCTCTCAGAGCGCTCGAACCGCAGTGAGTTGAACAGCGGCCGCTCGTACGGCGTGATGGGCATTTCctccttatacacacacaccttcagcTTAGCAAAGCGGGCCTTCCTCTGCATTGCTCGTAACTTCGCTATCTCCACAATTC

Function

symbol description
kctd7 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD7 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238571 True 3598 lncRNA 0.37 3 14076346 14080087

Neighbor

gene id symbol gene type direction distance location
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding downstream 138072 13935026 ~ 13938274 (-)
mdh2 mdh2,LOC107588934,LOC107691667 coding downstream 312163 13756244 ~ 13764183 (-)
LOC103021466 NA coding downstream 349200 13717862 ~ 13727146 (-)
LOC103047751 LOC108276801,LOC107728853,LOC107577624,LOC107686144 coding downstream 361199 13594436 ~ 13715147 (-)
LOC103034318 LOC103034318 coding downstream 503555 13543955 ~ 13572791 (-)
ppm1e ppm1e,LOC102780278 coding upstream 62087 14142174 ~ 14222311 (-)
rad51c rad51c coding upstream 149470 14229557 ~ 14244100 (-)
zbtb21 zbtb21 coding upstream 168581 14248668 ~ 14257220 (-)
LOC103043578 LOC108411121 coding upstream 205851 14285938 ~ 14314833 (-)
LOC103045094 NA coding upstream 612593 14692680 ~ 14714840 (-)
G176148 LOC108415819 non-coding downstream 13127 14062794 ~ 14063219 (-)
G176147 LOC108415819,LOC107588830 non-coding downstream 17899 14058168 ~ 14058447 (-)
G176145 NA non-coding downstream 26045 14049831 ~ 14050301 (-)
G176099 NA non-coding downstream 207958 13867806 ~ 13868388 (-)
G176069 NA non-coding downstream 336080 13739596 ~ 13740266 (-)
G176139 rabgef1,LOC107734461,LOC107728875,LOC107577469 non-coding upstream 7012 14087099 ~ 14090115 (-)
G176134 rabgef1,LOC107734461 non-coding upstream 16163 14096250 ~ 14098678 (-)
G176154 NA non-coding upstream 21795 14101882 ~ 14106078 (-)
G176179 NA non-coding upstream 193381 14273468 ~ 14274362 (-)
G176184 NA non-coding upstream 238634 14318721 ~ 14352127 (-)
G176138 NA other downstream 3662 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 10202 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 24385 14051562 ~ 14051961 (-)
tex14 NA other downstream 261836 13774803 ~ 13814510 (-)
LOC111195111 NA other downstream 327696 13746636 ~ 13748650 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 577183 14657270 ~ 14670670 (-)
LOC111194989 NA other upstream 1448209 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1700468 15780555 ~ 15790644 (-)
G177526 NA other upstream 4091762 18171849 ~ 18174525 (-)
G177568 NA other upstream 4317495 18397582 ~ 18403008 (-)

Expression


Co-expression Network