G176184


Basic Information

Item Value
gene id G176184
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14318721 ~ 14352127 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238613
CAAATAATCAGTACtgcatttttttcctaatatatttataaagcaatCACACAGCCTCAGCATATAAACAGTTGTTATACCTGAAATTCTGATGAATTTGTCCCTGATCACAGACTGCGTGGGCTTATATTCTCTCACCATTGGTCCAAAGTTTTAGAATACAGTTCAAATAGGGATTATAACACATTTTACGTTACCACAGTCAGTATTACACCAATACATCAGTTACTGTGAGGCAGAGGTAACTGAATGGTAGATTGCTTCTCACTGATGAGGGTGTATGTAATGGATTAAATCCGTACAGTAAAATGATGCAAGTACATGAAAATAACTATTAATTGTCAGTCTTCCAGTGAAAAAGTGGAGTTTGAATGAAAATaactgaaagaaaaaagcaGTGAATACTTCAGTGGTGTCTCAATAAATAATCTGCAATTACACATTAAACAAAGATCACATCTCATATATAACCATATATCAACTTCACATTGACATTCCCTCTCATATTCAACTCATAATTCATCCtcttttctcactttataacaTCGCCTAATCAGCCTGGATAAAGCTTCTTATTTGTGCAACAAGCCATTCGAAATCATATAGTCAGGAGCACAGTCATATTTATGCCAACATATATTTCTTCCACAGAATCATTTCTATAAGGCAACATATGTATTGCATTGTTTGTGCAAAAATGAAATAACTTAAAGGGGGAAATAGGTCTGGCCGCTTTATCAGTCAGGGAACTATAAAAGGgtaaaaacatttagaaattcAGCCTTATTTCAAACAAATTACTATTTGTGATGTGATGACTAAGTATAACCATTCTTTATAAATACAACCAGTtgctgtgtttaaatatagtctattctgcaaaaaaaaatatatatatatataataaatggcCAATACTAAACCATGTTTTACCTTAAATACCAATTAAGGTTTGAAA

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
TU238613 True 958 lncRNA 0.32 2 14318721 14352127

Neighbor

gene id symbol gene type direction distance location
LOC103043578 LOC108411121 coding downstream 3888 14285938 ~ 14314833 (-)
zbtb21 zbtb21 coding downstream 61501 14248668 ~ 14257220 (-)
rad51c rad51c coding downstream 74621 14229557 ~ 14244100 (-)
ppm1e ppm1e,LOC102780278 coding downstream 96410 14142174 ~ 14222311 (-)
LOC103039046 myl10,LOC108413922,LOC107734439,LOC108276823,LOC107577538,LOC107728843,LOC107588876 coding downstream 380447 13935026 ~ 13938274 (-)
LOC103045094 NA coding upstream 340553 14692680 ~ 14714840 (-)
LOC103045405 LOC103045405,LOC108442105 coding upstream 363384 14715511 ~ 14720986 (-)
LOC103045698 NA coding upstream 379474 14731601 ~ 14736873 (-)
LOC103046216 lhfp,LOC103046216,LOC108442104,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC107686123 coding upstream 391189 14743316 ~ 14795102 (-)
LOC103046520 LOC108442103 coding upstream 509580 14861707 ~ 14902599 (-)
G176179 NA non-coding downstream 44359 14273468 ~ 14274362 (-)
G176154 NA non-coding downstream 212643 14101882 ~ 14106078 (-)
G176134 rabgef1,LOC107734461 non-coding downstream 220043 14096250 ~ 14098678 (-)
G176139 rabgef1,LOC107734461,LOC107728875,LOC107577469 non-coding downstream 228606 14087099 ~ 14090115 (-)
G176150 kctd7,LOC106603469,LOC108415927 non-coding downstream 238634 14076346 ~ 14080087 (-)
G176203 NA non-coding upstream 219883 14572010 ~ 14572473 (-)
G176248 NA non-coding upstream 376211 14728338 ~ 14728932 (-)
G176277 NA non-coding upstream 487379 14839506 ~ 14844568 (-)
G176308 NA non-coding upstream 603176 14955303 ~ 14955563 (-)
G176415 NA non-coding upstream 860994 15213121 ~ 15213420 (-)
G176138 NA other downstream 246037 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 252577 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 266760 14051562 ~ 14051961 (-)
tex14 NA other downstream 504211 13774803 ~ 13814510 (-)
LOC111195111 NA other downstream 570071 13746636 ~ 13748650 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other upstream 305143 14657270 ~ 14670670 (-)
LOC111194989 NA other upstream 1176169 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1428428 15780555 ~ 15790644 (-)
G177526 NA other upstream 3819722 18171849 ~ 18174525 (-)
G177568 NA other upstream 4045455 18397582 ~ 18403008 (-)

Expression


Co-expression Network