G176216


Basic Information

Item Value
gene id G176216
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14670284 ~ 14670678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238651
CTTTACGGAGCTGGAGCTCAGCCGGAGTCAGGTCCTCACTGCTGCCGATTATAATCcactaaaaacagtttaaactgGTTCAGAGTTAATCCAGCGCGAGAGCAGCTCCGCGTGAAGAAAACTGGAGGTAAGCGAAATAAAGCATCATATAGAAAAATCCACCAGCAGCTCGCGAGCTTCCTGCCGCTCTTTCTCCTCGCGTTTTCTCGCTGTCTCGTGCGCCTCTCGCGCTGCAGCCCTGAGGAATGCGCTGCACCGACTGGCTCGCGCTCTGCGAGTGGatgagagagagagagagagggggtgagCACGCAGGCAGGAGACAGAGAGCGAGCgagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238651 True 339 lncRNA 0.56 2 14670284 14670678

Neighbor

gene id symbol gene type direction distance location
uvrag uvrag,LOC108413435,LOC108411119 coding upstream 164280 14356296 ~ 14506004 (+)
dgat2 dgat2,LOC107746984 coding upstream 318096 14340408 ~ 14352188 (+)
mogat2 mogat2 coding upstream 338725 14317405 ~ 14331559 (+)
LOC103043274 NA coding upstream 388555 14263394 ~ 14281729 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 422625 14244212 ~ 14247659 (+)
LOC111195050 NA coding downstream 52305 14722983 ~ 14729064 (+)
LOC103022111 LOC103022111 coding downstream 248181 14918859 ~ 14921856 (+)
trnal-uag_3 NA coding downstream 256650 14927328 ~ 14927409 (+)
LOC103024204 NA coding downstream 811381 15482059 ~ 15487211 (+)
LOC103024827 NA coding downstream 826801 15497479 ~ 15501315 (+)
G176010 NA non-coding upstream 133737 14536268 ~ 14536547 (+)
G176000 NA non-coding upstream 382010 14285302 ~ 14288274 (+)
G175999 NA non-coding upstream 383311 14284227 ~ 14286973 (+)
G175997 NA non-coding upstream 391716 14277728 ~ 14278568 (+)
LOC103042124 NA non-coding upstream 427141 14142167 ~ 14243143 (+)
G176258 NA non-coding downstream 168832 14839510 ~ 14917161 (+)
G176372 NA non-coding downstream 389951 15060629 ~ 15064133 (+)
G176383 NA non-coding downstream 406462 15077140 ~ 15077416 (+)
G176384 NA non-coding downstream 407040 15077718 ~ 15078159 (+)
G176394 LOC108427250,LOC107744134,LOC563710,LOC107720650,LOC107687808,LOC107678044,LOC107560524 non-coding downstream 430799 15101477 ~ 15124591 (+)
LOC103039555 LOC108415819 other upstream 600922 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 781240 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 801429 13847262 ~ 13868855 (+)
G175900 NA other upstream 984721 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 1251868 13353768 ~ 13418416 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 1123586 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 2150257 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 2372157 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 3468034 18138712 ~ 18174518 (+)
G177219 NA other downstream 3553595 18224273 ~ 18226133 (+)

Expression


Co-expression Network