G176248


Basic Information

Item Value
gene id G176248
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14728338 ~ 14728932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238692
ATGCTGACAGTTGTATGTTGCTTACATGGCTTGGCAAAATGCAATAGATAAAACGTTCCTCATCTGTGGGTCTTTGCAACGGGCACCCAAGTGCAGACTGGACATTTAAAACCAGTTATTACCATTTACTTTGCGTCCAGCTGAAGACATATCGCTGTTTAAGACAAATGGCAATATATACACCCACAATGTTAGTTTTTAAAAGCACAGTATTAATGCAAAGACATGTCAATGTCCATCAATATATTGTCACTTAGATGAAATGACATGccaaaacacattcataagctTTAAAGATTTTTGTTACGGCACATTGCGCTGAATCACAGGTGGAAGTCATAGGGTTCAAGTTTAATTGTAATGGTGTGACATTCATCCTCTTCCTCATACTCCTCCTTACACTCCTCCTTATCCTCCTTATACTCCTCCTTACACTCCTCCTTATACTCCTCCTTATACTCCTTTTCCTCCTCCTTATACTCcttttcctcctccttcttctcctcctctttctcctcttccttatcctcctccttttcttcttcatcttcttcctcTTCATATACCC

Function

NR:

description
PREDICTED: chemokine XC receptor 1-like

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03030 DNA replication

RNA

RNA id representative length rna type GC content exon number start site end site
TU238692 True 568 lncRNA 0.40 2 14728338 14728932

Neighbor

gene id symbol gene type direction distance location
LOC103045405 LOC103045405,LOC108442105 coding downstream 7352 14715511 ~ 14720986 (-)
LOC103045094 NA coding downstream 13498 14692680 ~ 14714840 (-)
LOC103043578 LOC108411121 coding downstream 413505 14285938 ~ 14314833 (-)
zbtb21 zbtb21 coding downstream 471118 14248668 ~ 14257220 (-)
rad51c rad51c coding downstream 484238 14229557 ~ 14244100 (-)
LOC103045698 NA coding upstream 2669 14731601 ~ 14736873 (-)
LOC103046216 lhfp,LOC103046216,LOC108442104,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC107686123 coding upstream 14384 14743316 ~ 14795102 (-)
LOC103046520 LOC108442103 coding upstream 132775 14861707 ~ 14902599 (-)
ap4m1 ap4m1,LOC107742404,LOC107702797,LOC107720677,LOC107554303 coding upstream 174594 14903526 ~ 14913222 (-)
trnat-agu_12 NA coding upstream 198760 14927692 ~ 14927765 (-)
G176203 NA non-coding downstream 155865 14572010 ~ 14572473 (-)
G176184 NA non-coding downstream 376211 14318721 ~ 14352127 (-)
G176179 NA non-coding downstream 453976 14273468 ~ 14274362 (-)
G176154 NA non-coding downstream 622260 14101882 ~ 14106078 (-)
G176134 rabgef1,LOC107734461 non-coding downstream 629660 14096250 ~ 14098678 (-)
G176277 NA non-coding upstream 110574 14839506 ~ 14844568 (-)
G176308 NA non-coding upstream 226371 14955303 ~ 14955563 (-)
G176415 NA non-coding upstream 484189 15213121 ~ 15213420 (-)
G176421 NA non-coding upstream 513858 15242790 ~ 15243027 (-)
LOC111195051 NA non-coding upstream 528683 15257615 ~ 15261415 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 57668 14657270 ~ 14670670 (-)
G176138 NA other downstream 655654 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 662194 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 676377 14051562 ~ 14051961 (-)
tex14 NA other downstream 913828 13774803 ~ 13814510 (-)
LOC111194989 NA other upstream 799364 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 1051623 15780555 ~ 15790644 (-)
G177526 NA other upstream 3442917 18171849 ~ 18174525 (-)
G177568 NA other upstream 3668650 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 3756710 18485642 ~ 18531635 (-)

Expression


Co-expression Network