G176277


Basic Information

Item Value
gene id G176277
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14839506 ~ 14844568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238728
TTGTCAGCCCTGAGGCTCCACCCATGCCCTCTCAGCAGCGCTCGACGTCGCCGGAGTTCTGATCACCGGCCCAACCTCCCAGCTGATCATCATCAGCTGGGGTATTTAAGTGACTCTAACTCTATAGACAGTGCGAAGTCTTAGTTGCCGAATCTGTGTTTCTGAGTTCTGAGCATTTCTAGATATCTGTTTCATTGTTACTGACCTCTGCCTGATCCTCGACCCCGATTCTGCCTATCTCTGATACTCCTGTTTGCCGGTACTTAGACCCCTGCCTGTATttggatttgtttgtgttttgtggaaATAAAGAGTCTGCACCTGCATCCAGCCTCCCTCCTCCTTGGGGTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238728 True 354 lncRNA 0.51 2 14839506 14844568

Neighbor

gene id symbol gene type direction distance location
LOC103046216 lhfp,LOC103046216,LOC108442104,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC107686123 coding downstream 44404 14743316 ~ 14795102 (-)
LOC103045698 NA coding downstream 102633 14731601 ~ 14736873 (-)
LOC103045405 LOC103045405,LOC108442105 coding downstream 118520 14715511 ~ 14720986 (-)
LOC103045094 NA coding downstream 124666 14692680 ~ 14714840 (-)
LOC103043578 LOC108411121 coding downstream 524673 14285938 ~ 14314833 (-)
LOC103046520 LOC108442103 coding upstream 17139 14861707 ~ 14902599 (-)
ap4m1 ap4m1,LOC107742404,LOC107702797,LOC107720677,LOC107554303 coding upstream 58958 14903526 ~ 14913222 (-)
trnat-agu_12 NA coding upstream 83124 14927692 ~ 14927765 (-)
trnas-gcu_4 NA coding upstream 86364 14930932 ~ 14931013 (-)
LOC103024514 pla2g1b,LOC108427228 coding upstream 657895 15502463 ~ 15506669 (-)
G176248 NA non-coding downstream 110574 14728338 ~ 14728932 (-)
G176203 NA non-coding downstream 267033 14572010 ~ 14572473 (-)
G176184 NA non-coding downstream 487379 14318721 ~ 14352127 (-)
G176179 NA non-coding downstream 565144 14273468 ~ 14274362 (-)
G176154 NA non-coding downstream 733428 14101882 ~ 14106078 (-)
G176308 NA non-coding upstream 110735 14955303 ~ 14955563 (-)
G176415 NA non-coding upstream 368553 15213121 ~ 15213420 (-)
G176421 NA non-coding upstream 398222 15242790 ~ 15243027 (-)
LOC111195051 NA non-coding upstream 413047 15257615 ~ 15261415 (-)
G176428 NA non-coding upstream 417676 15262244 ~ 15275102 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 168836 14657270 ~ 14670670 (-)
G176138 NA other downstream 766822 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 773362 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 787545 14051562 ~ 14051961 (-)
tex14 NA other downstream 1024996 13774803 ~ 13814510 (-)
LOC111194989 NA other upstream 683728 15528296 ~ 15565463 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 935987 15780555 ~ 15790644 (-)
G177526 NA other upstream 3327281 18171849 ~ 18174525 (-)
G177568 NA other upstream 3553014 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 3641074 18485642 ~ 18531635 (-)

Expression


Co-expression Network