G176384


Basic Information

Item Value
gene id G176384
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15077718 ~ 15078159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238843
AAGCTGCAAGACCATTTAAATTCTAAACAACTAAAAGCACTTTAAACTGTATTCTGTATTGGACTGGTAGCAATGAAGCGAGGCGAGAACTGGAGttatatatcttttttgtttgtttttttgttaaaaatcttCATGCAGCATTCTGGACTAACTCTAAGCGATGCAGAAGAGACTGGTTAATCctaatgtacagtactgtgaaaAGCTTtcagcaccaaagcaaattacactaaatcCTTTTTTCTCAGCAATATgaatgtttttacctgaaaaaagcaccacatatgatttaaacagatgcaaataaacattaatacagtaaaacgcaacagggaattctcatttttaactgtaAGTATGTTAGATCCTGTGAGCCTGAAGCTGAAGaataaagtgtagagattccagatttctcctggatgctcctcagccagcatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238843 True 442 lncRNA 0.35 1 15077718 15078159

Neighbor

gene id symbol gene type direction distance location
trnal-uag_3 NA coding upstream 150309 14927328 ~ 14927409 (+)
LOC103022111 LOC103022111 coding upstream 155862 14918859 ~ 14921856 (+)
LOC111195050 NA coding upstream 348654 14722983 ~ 14729064 (+)
uvrag uvrag,LOC108413435,LOC108411119 coding upstream 571714 14356296 ~ 14506004 (+)
dgat2 dgat2,LOC107746984 coding upstream 725530 14340408 ~ 14352188 (+)
LOC103024204 NA coding downstream 403900 15482059 ~ 15487211 (+)
LOC103024827 NA coding downstream 419320 15497479 ~ 15501315 (+)
LOC111195055 NA coding downstream 794093 15872252 ~ 15880621 (+)
LOC103046796 atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118 coding downstream 865471 15943630 ~ 15985372 (+)
rusc2 NA coding downstream 914154 15992313 ~ 16008456 (+)
G176383 NA non-coding upstream 302 15077140 ~ 15077416 (+)
G176372 NA non-coding upstream 13585 15060629 ~ 15064133 (+)
G176258 NA non-coding upstream 160557 14839510 ~ 14917161 (+)
G176216 NA non-coding upstream 407040 14670284 ~ 14670678 (+)
G176010 NA non-coding upstream 541171 14536268 ~ 14536547 (+)
G176394 LOC108427250,LOC107744134,LOC563710,LOC107720650,LOC107687808,LOC107678044,LOC107560524 non-coding downstream 23318 15101477 ~ 15124591 (+)
G176426 NA non-coding downstream 184037 15262196 ~ 15275158 (+)
G176444 prkab1 non-coding downstream 433976 15512135 ~ 15521326 (+)
G176448 NA non-coding downstream 448006 15526165 ~ 15565245 (+)
LOC111195053 NA non-coding downstream 533479 15611638 ~ 15612674 (+)
LOC103039555 LOC108415819 other upstream 1008356 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 1188674 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 1208863 13847262 ~ 13868855 (+)
G175900 NA other upstream 1392155 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 1659302 13353768 ~ 13418416 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other downstream 716105 15794264 ~ 15973657 (+)
fam136a fam136a,LOC102792467 other downstream 1742776 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 1964676 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 3060553 18138712 ~ 18174518 (+)
G177219 NA other downstream 3146114 18224273 ~ 18226133 (+)

Expression


Co-expression Network