LOC111194989


Basic Information

Item Value
gene id LOC111194989
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15528296 ~ 15565463 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU238968
GGATGTCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGGAAGTTTGGCGGTTGTGTGGCTCCTGGGACACACTCAGCTTTTGAGACACAATGGTTTCTGGGAACAGGATCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTGTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGTTCTGCTCAGCCCTGAGTACTT
>TU238970
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGgaTCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTTTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGGTTCTGCTCAGCCTCTGAGTACTTCTGGTAGGGGAGACTCTGTTGCTAATGTTCCTGGATTCCTAAGGCAGTACACAATTTCCCAAGCCAGAATGTCCTCAGCCCTCAGagcactgctaaccaggctGCCCGTGGATTTCAGAACCAATTAGTGAGTAGTCCAGTCTCTTCAGCCCCAAGTTCAGCTAGCCAGTCTCTTTCCTCTCAGCAGAGCAGCTTGCAGTTTGCATCTCCAGGCCAAGCAACTTCTTCTCTGCCTCAGAGCTTTACAGCTAATTATGTCTTTGGCACCCAGACCCAGCCATCAAGCCCTGGCACAGTATCCCTGAGTGTGGCAAGTGACTTCCCAACCACCTCCCAGCAAGCTAGCTCTGGTTCCCAGTCAGCAGTAGGTACACTGTATGCTCAACCTTCAAACTGGTATTCCTTTACACTGTATGCTCAACCTTCAAACTGGTATTCCTTTACACTGGGTCAGGCACCTTCCCAATCTGCTACTGCCTCATACAAGCCTGTGTCTCAATCCCAGAGTTCAGCCAGCCAGTCTTCTGCCTTGCAGCAAAGCAGCTTGCAGTTAGCATCTCCAAGCCAGGGCACTGCTACTGTTCCTGGAATCCAGGTGCAAACTTCAAGCCCAGTGACCTCAACCCTGAGTTTAGCAAGCAGCCTGCCCACAACTTCCCAACAAGCTACATCTGGTTCCCAGTTAGCAACAGGTACACTGTATGGTCAACCCTCTAGCTGGTATTCCTTTACACTAGGTCAGACACCTTCCCAGACTGTTACTGCCTCATACAAACCTGTATCTCTGCCCCAGGGTTCAGCTAGCCAGACTTCTGCCTCCCAGCAGAGCAGCTTGCAGTTAGTATCTCCAAGCCTAGGAAGTTCTTCTCTGCCTCAGAGCCTTTCATCCAGCTATGTCTTTGGGAGTGGGACCCAGCCATCAAGCCCTGGCACAGTATCCCTGAGTGTAGCAAGTGACGTTCCCACAACCTCCCAGCAAGCTAGCTCTGGTTCCCAGTCAGCAGCAGGTGCGCTGTATGGTCAACCCTCTAGCTGGTATTCCTTTACTCTAGGTCAGACACCTGCCCAGTCTGTGACTACCTCATACAAGCCTGTATCTTCATCCCAGGGTTCAGCTAGCCAGACTTCTGCCTCACCGCAGAGCAGCTTAAGCTCCTCAAAGTCAGGT
>TU238972
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGgaTCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTTTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGGTTCTGCTCAGCCTCTGAGTACTTCTGGTAGGGGAGACTCTGTTGCTAATGTTCCTGGATTCCTAAGGCAGTACACAATTTCCCAAGACCAGAATGTCCTCAGCCCATTCGGTTCCTTTCCCCAGTCTCAAGGCTGGGCTACACAGCTCTGTCTTCA
>TU238973
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGgaTCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTTTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGGTTCTGCTCAGCCTCTGAGTACTTCTGGTAGGGGAGACTCTGTTGCTAATGTTCCTGGATTCCTAAGGCAGTACACAATTTCCCAAGCCAGAATGTCCTCAGCCCTCAGagcactgctaaccaggctGCCCGTGGATTTCAGAACCAATTAGTGAGTAGTCCAGTCTCTTCAGCCCCAAGTTCAGCTAGCCAGTCTCTTTCCTCTCAGCAGAGCAGCTTGCAGTTTGCATCTCCAGGCCAAGCAACTTCTTCTCTGCCTCAGAGCTTTACAGCTAATTATGTCTTTGGCACCCAGACCCAGCCATCAAGCCCTGGCACAGTATCCCTGAGTGTAGCAAGTGACGTTCCCACAACCTCCCAGCAAGCTAGCTCTGGTTCCCAGTCAGCAGCAGGTGCGCTGTATGGTCAACCCTCTAGCTGGTATTCCTTTACTCTAGGTCAGACACCTGCCCAGTCTGTGACTACCTCATACAAGCCTGTATCTTCATCCCAGGGTTCAGCTAGCCAGACTTCTGCCTCACCGCAGAGCAGCTTAAGCTCCTCAAAGTCAGGT
>TU238975
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGgaTCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTGTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGTTCTGCTCAGCCCTGAGTACTT
>TU238981
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGGATCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTGTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGTTCTGCTCAGCCCTGAGTACTT
>TU238985
CGCTAATCTTATTAATCTAATCCTAGAATAATCGACCTACAGAATTTGCAAGCATTAGTAACTGCAGCTTTCAACAAAATGCCTTTTGAAAGCAGGTCATTcattactaaaactaaattagCCTCAGCTGAAGGTTGATTAAAGAAATCATGTGACATGGGTCATGTGACCAGCCTGGATGCCTTATAAGGAGTCAAAGAGGAGTTGGAGGTATGTCTGCTTACTTTGTGGTTTGTATTTGTTTGGGAAGTAAGTTTGGCGATTGTGCGGCTCCTGGGACACACTCAGCTTTTGAGACATGATGTTTTCTGGGAACAGgaTCCTGTTCCTTTGCTTGGCattatttatttggagaaaTGCTAATGGACTTGGAGTCTGGCAAAACAGACCTGCTAACTACTGGCAAAGTGGTGGTGTTTCCAAAAGCTTTGGAGATACAGCTCTTTCCCCTGCCCAGCAAGGCTTCAGCAGCTCTGCAAGTGGAGTACAAACTGCAGTGGGTGATGTTGGTTCTGCTCAGCCTCTGAGTACTTCTGGTAGGGGAGACTCTGTTGCTAATGTTCCTGGATTCCTAAGGCAGTACACAATTTCCCAAGACCAAAATGTCCTCAGCCCATTCGGTTCCTTTCCCCAGTCTCAGGCTGGCTACACAGCTCTGTCTTCAGTTTCATCAGGGGGATTAAGTTTGCCACTTCAGagcactgctaaccaggctGCCCTTGGATTTCAGAACCAATTAGTGAGTAGTCCAGTCTCTG
>XM_022680708.1
ATTCCTAAGGCAGTACACAATTTCCCAAGCCAGAATGTCCTCAGCCCTCAGagcactgctaaccaggctGCCCGTGGATTTCAGAACCAATTAGTGAGTAGTCCAGTCTCTTCAGCCCCAAGTTCAGCTAGCCAGTCTCTTTCCTCTCAGCAGAGCAGCTTGCAGTTTGCATCTCCAGGCCAAGCAACTTCTTCTCTGCCTCAGAGCTTTACAGCTAATTATGTCTTTGGCACCCAGACCCAGCCATCAAGCCCTGGCACAGTATCCCTGAGTGTGGCAAGTGACTTCCCAACCACCTCCCAGCAAGCTAGCTCTGGTTCCCAGTCAGCAGTAGGTACACTGTATGCTCAACCTTCAAACTGGTATTCCTTTACACTGGGTCAGGCACCTTCCCAATCTGCTACTGCCTCATACAAGCCTGTATCTTCATCCCAGGGTTCAGCTAGCCAGACTTCTGCCTCACCGCAGAGCAGCTTAAGCTCCTCAAGTCAGGTCACTACTTCTGTAAGTCAGAGCCTTCCATCTAGTTATGTCTCTGGAATTCAGGCACAATATTCAAGCCCAGTGACCTCAACCCTGAGTTTAGCAAGCAACCTGCCCACAAGCTCCCAACAAGCTAGCTCTGGTTCACAGTTAGCAACAGGTACACTGTATGGTCAGCCATCTAGTTGGTTTTCCTCTACACAGGGTCAAAGTTTTCAGACTGCTTCCCAGTTTGGTGCTTCCCCAGACAGATCTGCATCCTCCTCACAAGGTTCAGTAAGTCTGTCTAGTTCTACACTTCAAACGCCTTCCCAGTTTCAGGCTACCCCATACAAACCTGTATTTACATCCCAGGGTTCAGCTAGTCAATCCCTTACATCACAGCAGAGCAGCTTGCAAGTAACCTCTCCAAGCCAGGGAGTTTCTTCTCAGCCTTTGACCCAGACCCAGCCATCAAGACCTGTGACCGTACCCCTGAGTGTAGCAAGTGAGTTCCCCACAACCTCCCAGCAAGCTAGTTCTGTTTCTCAATCAGCAGCAGGTACACTATATGGTCAGCCCTCTAGCTGGTATTCCTTTACTCAGGGTCAGACACCTTCCCAATCTGTTACCACCTCATACAAACCTGTGTCTCTGCCCCAGGGTTCAGCTAGCCAGTCTTTTGCCTCACAGCAAAGCAGCTTGCAGTTAGGCTCTCCAAGCCTGGGCACTGCTTCTGTTCCTGCAATCCAGATGCAATCTTCAAGCCCAGTGACCTCAACCCTGAGTTTGACAAGCAACCTTCCCACAAGCTCCCAGGCCCAAACTAGCTATGTGTCCCAGTCAGCAACAGATCCACTCCATGGACATGCCTCTAGCTTGTATTCCTCTACGCAAGGCCAGGGTGTTCAGATTGCATCCCGGTCTGCAGATGCCCCAAACACCCTTGGAGTAGCTGTAATTGGTGTGTATACTGCCGGACCAGCTCAGTGGTATAGGGTAGATCCTTTTGGCCGGACTAGCCAAATCAACGTGCTGCCGTCCCCATCTCAGGCCACAGGGAGTCTAGGTAGCCAGGCAGCATCAAGCAGCTCTACCACTACATCTCAAAGCCAAAGCACCACAGGGTCTGTTGGGTTTGGCTTCCAAAGCCAGAGTGCACCAGCTTCAACTGTATCTCTGACCCAGGGTGCTGCCCAGCTTCCAACCTTGACCCAGGGTGCTGCCCAGCTTCCAACCTTGACCCAGGGTGCTGCCCAGCTTCCAACCTTGACCCAGGGTGCTGCCCAGCTTCCAACCTTGACCCAGGGTGCTGCCCAGCTTCCATCCTTCACTGCTGCCAACCCCTCTGCCTCTGTGTCTCAGCCATCCCAGGGGGAGCAGAGCTCATGGAGATCTTCAGGTGTGTCTACATCCTTTGGCCAAAGCTCTTCTGGACAGGTTGCCCCTGTAGCCACTACACAACAGTTCTCCTCTGGATGGCAAGGCCCTGTCTTTTCTGGCACTTTCCCCTCCCAATCTGCAAGCACCTCGCCAAGCTCTGGCAGCTATGGATCTACATTTCAAAGCAGAGCAACCCAGGTAGGAAGCTTTGACCAGTTCAGCCAAGTAAGCAGCCCTCTATCTGTAGCCTCCACATTCACTAAAGGTATCCCAACCAGCTTTGGACTTCTGCAAGGCTACAGCAGCCAGCCTATTGACTTCAGACCTGCCACCCAGAGAGGCAGTGACTTTTTGGTCAATTAATAATTGATGGCATGTGTGTATGCAAGTTTAACTTTTGTATGAagaatttgtaataaaaaatatattgtcatttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238968 False 355 TUCP 0.47 4 15531209 15559288
TU238970 False 1701 TUCP 0.49 4 15528296 15565463
TU238972 False 666 TUCP 0.45 4 15529393 15565463
TU238973 False 1062 TUCP 0.48 4 15528296 15565463
TU238975 False 531 lncRNA 0.43 4 15531209 15565463
TU238981 False 531 lncRNA 0.43 4 15531209 15565463
TU238985 False 758 TUCP 0.45 4 15530986 15565463
XM_022680708.1 True 2284 mRNA 0.51 3 15561734 15564716

Neighbor

gene id symbol gene type direction distance location
LOC111195052 prkab1 coding downstream 3707 15510154 ~ 15524589 (-)
LOC103024514 pla2g1b,LOC108427228 coding downstream 21627 15502463 ~ 15506669 (-)
trnas-gcu_4 NA coding downstream 597283 14930932 ~ 14931013 (-)
trnat-agu_12 NA coding downstream 600531 14927692 ~ 14927765 (-)
ap4m1 ap4m1,LOC107742404,LOC107702797,LOC107720677,LOC107554303 coding downstream 615074 14903526 ~ 14913222 (-)
phf24 phf24,LOC107713387,LOC107677982 coding upstream 13560 15579023 ~ 15643714 (-)
LOC111194982 NA coding upstream 110552 15676015 ~ 15678008 (-)
LOC111195054 NA coding upstream 154330 15719793 ~ 15724742 (-)
pigo pigo,LOC107713385,LOC107686475 coding upstream 191721 15757184 ~ 15777900 (-)
fam166b NA coding upstream 447907 16013370 ~ 16018295 (-)
G176464 NA non-coding downstream 26795 15497811 ~ 15501501 (-)
G176457 NA non-coding downstream 74422 15453673 ~ 15453874 (-)
G176438 NA non-coding downstream 89875 15438061 ~ 15438421 (-)
G176428 NA non-coding downstream 253194 15262244 ~ 15275102 (-)
LOC111195051 NA non-coding downstream 266881 15257615 ~ 15261415 (-)
G176472 NA non-coding upstream 12220 15577683 ~ 15577900 (-)
G176484 NA non-coding upstream 117503 15682966 ~ 15683361 (-)
G176485 NA non-coding upstream 118050 15683513 ~ 15684059 (-)
G176486 NA non-coding upstream 118795 15684258 ~ 15684512 (-)
G176527 NA non-coding upstream 164813 15730276 ~ 15735436 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 857626 14657270 ~ 14670670 (-)
G176138 NA other downstream 1455612 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 1462152 14063500 ~ 14066144 (-)
G176146 LOC108415819 other downstream 1476335 14051562 ~ 14051961 (-)
tex14 NA other downstream 1713786 13774803 ~ 13814510 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other upstream 215092 15780555 ~ 15790644 (-)
G177526 NA other upstream 2606386 18171849 ~ 18174525 (-)
G177568 NA other upstream 2832119 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 2920179 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 3049429 18614892 ~ 18618612 (-)

Expression


Co-expression Network