G176688


Basic Information

Item Value
gene id G176688
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16328540 ~ 16328832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239296
ACCAGCAACGCAAAGAGCAAGCTTTAGAGAGAAGTTTATCGGCTTTTATAAGCTTCTTGAACacagatttatacatttgtatgtgtgtgtgttaaaatggtgcgGACTTGTGATTATCCAGGCTGTAGCAACAAAGATGTGGCTGATTCTCCGCACAGTTTCCATCGTATCCCCGTGACTGACATTGCTCTCAGGCAACTTTGGATACTTGCAATGGGCTTCCATGTGGACACCAAAGTGGTGAAAATGAAGAAGCTTCGTGTTTGCGGTGCGCGCTGTTGTTTGTGATGCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239296 True 293 lncRNA 0.45 1 16328540 16328832

Neighbor

gene id symbol gene type direction distance location
LOC103044056 NA coding upstream 292976 16022161 ~ 16035564 (+)
rusc2 NA coding upstream 320084 15992313 ~ 16008456 (+)
LOC103046796 atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118 coding upstream 343168 15943630 ~ 15985372 (+)
LOC111195055 NA coding upstream 447919 15872252 ~ 15880621 (+)
LOC103024827 NA coding upstream 827225 15497479 ~ 15501315 (+)
sppl3 sppl3 coding downstream 28351 16357183 ~ 16404802 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding downstream 236917 16565749 ~ 16654846 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding downstream 348664 16677496 ~ 16685482 (+)
slc20a1 slc20a1,slc20a1b,LOC107555522,LOC107687859,LOC107713386 coding downstream 408080 16736912 ~ 16768304 (+)
ggcx ggcx,LOC107744113,LOC107569403,LOC107686456,LOC107688460 coding downstream 517114 16845946 ~ 16862878 (+)
LOC111195056 NA non-coding upstream 50259 16272657 ~ 16278281 (+)
G176602 NA non-coding upstream 141495 16186673 ~ 16187045 (+)
G176582 NA non-coding upstream 185568 16142530 ~ 16142972 (+)
G176579 ywhah,LOC108427260,LOC107744159,LOC107562560,LOC107713377,LOC107555530 non-coding upstream 195143 16130492 ~ 16133397 (+)
G176561 NA non-coding upstream 299163 16027396 ~ 16029377 (+)
G176692 NA non-coding downstream 6179 16335011 ~ 16409408 (+)
G176700 NA non-coding downstream 96838 16425670 ~ 16425881 (+)
G176811 NA non-coding downstream 343149 16671981 ~ 16672464 (+)
G176816 NA non-coding downstream 374014 16702846 ~ 16710537 (+)
G176822 NA non-coding downstream 471660 16800492 ~ 16873115 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 354883 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 2259178 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 2439496 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 2459685 13847262 ~ 13868855 (+)
G175900 NA other upstream 2642977 13679359 ~ 13685563 (+)
fam136a fam136a,LOC102792467 other downstream 492103 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 714003 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 1809880 18138712 ~ 18174518 (+)
G177219 NA other downstream 1895441 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 1996041 18324873 ~ 18330489 (+)

Expression


Co-expression Network