G176822


Basic Information

Item Value
gene id G176822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16800492 ~ 16873115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239450
gtaaACAACAGTTAGTCTTAGGAGACATTTCCTTGCAAAATTAGTACAAAACACATTTAtccacaaaaatataaacacagtgaCAACAGATCACCTACAATATGAGTTTAAATCTCATTGCTTTTACTCACAACACCTGATTACTTGTGCAATTTTACGCTGAACTTTTATCATGATCTCAAATCTCCAAGCCAACCGATACTTACACCAGCTCCAAATCTAAATTCTCTGGTCCCTAAACAGATATCAAATTTCGtggcaaataaatatatacctttattaattatattaaattgatttagtacaacaataaaatataaatcacaGTTATCCTCTTGTTTGAATTCTCTGAAATGCAGACTTGATgacttgctctgtctctgtatttgaataaaacaaaaaaatatatattgccaaTATTACCAAGAGTATAAGCATTTAGCTGTGTCCACAATTAAACCCAATAAAACAGAAGCCTAGATTACTGAATTTTGATTTAGACAAAACTGGTagcatttcttacatttcagACACAGATGTCCCaattcattccaccttaaatagttcAGCAGTTCCAAAGaagtgctgcaccatttaaggtggaatgaaaaatTTAACAGAACAATCTTTGGTCTTTCTAGTTGCTTTCTCACATTTCTAATTATTGCAAGTCTTCACAAAAGGCACAAAGCTAAGCTTCTTTACACCTTTTTGTCGGCGTTTGCATATTGAAACTATATTTAACTGATcaataataaagtcataataaagctctgaaatatcagctaacagacaccagCGCCACAAAGCATCACAATGAATGAAAGTGACGAGTGGAGAGAGCGCCTCcttctgtacccacccagagagaaacagcatgacctacagtactctctctctgactctggctgctgatggagaagcagcatgacccagcatttaaactaatttaaaccaATCTTTGggctgctggaccactcagaggtTAAAAGAACGTGTCGCCACCAGGTCATCATTCTTCTCTAATTaataagcaaaagaaaaacgtTTGAAACATtgaaaatgttgaaatgttgcTGATTATGAATGGTGGATATTATTATAGAAGAAAATCAATATGCTAATGAGTGATTATTGGCATATATTGGCATATATTTCTCAACCCACTTGGGGTGTTTGGAATGagatattttaattattgcttaattacttGCTTCTGAAACTAACTCTGCTGCAGTGCTCACAGTTTcacatattattaaaaaaaactggtggttacacagaaaaacaatggACTAATCAACTGTAAATCAACAACGGCTCACAGAAAGCTTTTAAAACCTAAAGACCCTGATTAGTATTAGCataaaaactattaattaataatttacccattcaaattaaaattaaaattactttattgGTGTTTTAGCTCTACCATTCACTACCACTGCTGTaaagaaaatcagagaaaaacaggctaTGTTCAGACAGCAGGTAAAAACTGAGCAAATATTTTTGGTCATATGAGACATATATGTTTGAATCTAATATCTACAGTTTTCAATTAGATCACAGTATTTTAAGAACAGTATTTTAATTAGAGGGAGCTGTTtctgctctgaaaaaaataagagagcacttaaaaataatgagcttctttgatttggccaaattgaaaacctctggaatataatcaagaggaagacggatgatcacaaaccatcaaaccaaactgaactgcttgaatttttgcaccaggagtaaaggcataaagttttccaaaagcagtgtgcaagactggtagaggagaacatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaaaactttaagaaaatgaacttgttttctttgcattacttgaggtctgaaagctctgcatcttttttgttatttcagccatttctccttttctgcaaataaatgctcaaaatgataatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctaaaaatagcaaaatcagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239450 True 2098 lncRNA 0.33 2 16800492 16873115

Neighbor

gene id symbol gene type direction distance location
slc20a1 slc20a1,slc20a1b,LOC107555522,LOC107687859,LOC107713386 coding upstream 32188 16736912 ~ 16768304 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding upstream 115010 16677496 ~ 16685482 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding upstream 145646 16565749 ~ 16654846 (+)
sppl3 sppl3 coding upstream 395690 16357183 ~ 16404802 (+)
LOC103044056 NA coding upstream 764928 16022161 ~ 16035564 (+)
LOC103040133 LOC103040133 coding downstream 114095 16987210 ~ 17002229 (+)
tctn1 NA coding downstream 444003 17317118 ~ 17330838 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding downstream 590886 17464001 ~ 17490044 (+)
LOC103023379 NA coding downstream 619098 17492213 ~ 17499861 (+)
LOC103021841 NA coding downstream 691799 17564914 ~ 17571469 (+)
G176816 NA non-coding upstream 89955 16702846 ~ 16710537 (+)
G176811 NA non-coding upstream 128028 16671981 ~ 16672464 (+)
G176700 NA non-coding upstream 374611 16425670 ~ 16425881 (+)
G176692 NA non-coding upstream 391084 16335011 ~ 16409408 (+)
G176688 NA non-coding upstream 471660 16328540 ~ 16328832 (+)
G176874 NA non-coding downstream 148536 17021651 ~ 17024488 (+)
G176888 NA non-coding downstream 199398 17072513 ~ 17072918 (+)
G176890 NA non-coding downstream 200950 17074065 ~ 17075371 (+)
G176896 NA non-coding downstream 209713 17082828 ~ 17085248 (+)
G176898 NA non-coding downstream 223208 17096323 ~ 17100092 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 826835 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 2731130 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 2911448 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 2931637 13847262 ~ 13868855 (+)
G175900 NA other upstream 3114929 13679359 ~ 13685563 (+)
G176882 inpp5j other downstream 169720 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 1265597 18138712 ~ 18174518 (+)
G177219 NA other downstream 1351158 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 1451758 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 1666783 18539898 ~ 18558444 (+)

Expression


Co-expression Network