G176832


Basic Information

Item Value
gene id G176832
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16824976 ~ 16828069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239461
GCAAGAGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcagTAAACACTTTCCATCACACTCCCCCCTTTGATTCTGAATCAATAAtgaaattttctttttacagctaATTTTATTTACCTTCATTAAACAAACGGTCTAGCCCAAATGCAGTATCTAACTCtattgtatctactgtaacttgcAGGAACTGGCCTTTCTTCTGCATATGGCGGAACaaaaattaatagatatatattagaaaagagtaaaagtacatcaacaaataaaatctCGATAGATCAACACATTTGCAacccatagagagagagagaagagagagagagaaagaaacagagagagagagaaagaaactaaaGCCAGTCGAGGGACAGAGAGAACTCCTCATacttcatccaagcagttatacactttgcaaatgacatgtgattgtacagaacttatcaatatgattacgtcagcagagtccagttaacagcatgttgtccagttttaatgacgtgattagctccagcctgtctgagcaacaggttcttatcatgatgttgttcagcactgtgtccttcatgaacacagcagacagtccttaagtgtcctaaagtctGTAAGAAGATgagacagaggaaaagagtggaTGTAAAGATCTTCTGgctatctgaggagaggtttccagcacttcactcagataacttgttgtctcctagttcatatgcactggtcccagaacagcagaacagcagtgaagcttctctgccactcagggtcacattctcctcacagctctcactgttgatgaaaacactctgaccttcctgattcctgaaaaaagtaaaaaaaacaacctccaaagccttgtcatagtgacagttaaaaagagagcagagatcataaggttattaagtgaattataatgtgaacagtaaaaataataactgtatatataaatgtataaaacatttaagaataagagtgtgaaggtgtggttatctccaatcatACCCTTCACTCCCCCCTTCTAGACCAAATGGAATCATCCAAGATTCCATGATGGTCTAcATAACGCCTAAGAAGCCCCGGGAGTAATGACAAGTGTCCGCATACAGAGCATGAGAACAAGTGTTTCTTCATCTCAGCTGTGGACATGCTGGGGCCTATTGCACACCAGTCCCCACGCCGGACTCTCCCTGCCTCGTCATGCCCACCATGGATCTGAGAAGATTCATAAACAAATTTTACTACattaactttctctttttttttccagaattacAACATGaagtttaaaagtgttaaaatcaaGTCAATGTTTTTCAACATTGTCACTGTTTTCGCTCTAGACTATAGAATACATAgtctcaacatttatttatcaaatgccttcatattttcttttaacctTTCACATTGTCTAATTTAATCTTCAACCacaataatgtatatttttttatgcatt
>TU239464
GCAAGAGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcagTAAACACTTTCCATCACACTCCCCCCTTTGATTCTGAATCAATAAtgaaattttctttttacagctaATTTTATTTACCTTCATTAAACAAACGGTCTAGCCCAAATGCAGTATCTAACTCtattgtatctactgtaacttgcAGGAACTGGCCTTTCTTCTGCATATGGCGGAACaaaaattaatagatatatattagaaaagagtaaaagtacatcaacaaataaaatctCGATAGATCAACACATTTGCAacccatagagagagagacagagagagagagaaagaaactaaaGCCAGTCGAGGGACAGAGAGAACTCCTCATacttcatccaagcagttatacactttgcaaatgacatgtgattgtacagaacttatcaatatgattacgtcagcagagtccagttaacagcatgttgtccagttttaatgacgtgattagctccagcctgtctgagcaacaggttcttatcatgatgttgttcagcactgtgtccttcatgaacacagcagacagtccttaagtgtcctaaagtctGTAAGAAGATgagacagaggaaaagagtggaTGTAAAGATCTTCTGgctatctgaggagaggtttccagcacttcactcagataacttgttgtctcctagttcatatgcactggtcccagaacagcagaacagcagtgaagcttctctgccactcagggtcacattctcctcacagctctcactgttgatgaaaacactctgaccttcctgattcctgaaaaaagtaaaaaaaacaacctccaaagccttgtcatagtgacagttaaaaagagagcagagatcataaggttattaagtgaattataatgtgaacagtaaaaataataactgtatatataaatgtataaaacatttaagaataagagtgtgaaggtgtggttatctccaatcatACCCTTCACTCCCCCCTTCTAGACCAAATGGAATCATCCAAGATTCCATGATGGTCTAcat
>TU239467
GCAAGAGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaataatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcagTAAACACTTTCCATCACACTCCCCCCTTTGATTCTGAATCAATAAtgaaattttctttttacagctaATTTTATTTACCTTCATTAAACAAACGGTCTAGCCCAAATGCAGTATCTAACTCtattgtatctactgtaacttgcAGGAACTGGCCTTTCTTCTGCATATGGCGGAACaaaaattaatagatatatattagaaaagagtaaaagtacatcaacaaataaaatctCGATAGATCAACACATTTGCAacccatagagagagagagagagagagagagagagagagagagagagagaaagaaactaaaGCCAGTCGAGGGACAGAGAGAACTCCTCATacttcatccaagcagttatacactttgcaaatgacatgtgattgtacagaacttatcaatatgattacgtcagcagagtccagttaacagcatgttgtccagttttaatgacgtgattagctccagcctgtctgagcaacaagttcttatcatgatgttgttcagcactgtgtccttcatgaacacagcagacagtccttaagtgtcctaaagtctGTAAGAAGATgagacagaggaaaagagtggaTGTAAAGATCTTCTGgctatctgaggagaggtttccagcacttcactcagataacttgttgtctcctagttcatatgcactggtcccagaacagcagaacagcagtgaagcttctctgccactcagggtcacattctcctcacagctctcactgttgatgaaaacactctgaccttcctgattcctgaaaaaagtaaaaaaaacaacctccaaagccttgtcatagtgacagttaaaaagagagcagagatcataaggttattaagtgaattataatgtgaacagtaaaaataataactgtatatataaatgtataaaacatttaagaataagagtgtgaaggtgtggttatctccaatcatACCCTTCACTCCCCCCTTCTAGACCAAATGGAATCATCCAAGATTCCATGATGGTCTAcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239461 True 1795 lncRNA 0.39 3 16824976 16828069
TU239464 False 1379 lncRNA 0.39 3 16824976 16827221
TU239467 False 1396 lncRNA 0.39 3 16824976 16827221

Neighbor

gene id symbol gene type direction distance location
slc20a1 slc20a1,slc20a1b,LOC107555522,LOC107687859,LOC107713386 coding upstream 56672 16736912 ~ 16768304 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding upstream 139494 16677496 ~ 16685482 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding upstream 170130 16565749 ~ 16654846 (+)
sppl3 sppl3 coding upstream 420174 16357183 ~ 16404802 (+)
LOC103044056 NA coding upstream 789412 16022161 ~ 16035564 (+)
ggcx ggcx,LOC107744113,LOC107569403,LOC107686456,LOC107688460 coding downstream 17877 16845946 ~ 16862878 (+)
LOC103040133 LOC103040133 coding downstream 159141 16987210 ~ 17002229 (+)
tctn1 NA coding downstream 489049 17317118 ~ 17330838 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding downstream 635932 17464001 ~ 17490044 (+)
LOC103023379 NA coding downstream 664144 17492213 ~ 17499861 (+)
G176838 NA non-coding upstream 9392 16808321 ~ 16815584 (+)
G176816 NA non-coding upstream 114439 16702846 ~ 16710537 (+)
G176811 NA non-coding upstream 152512 16671981 ~ 16672464 (+)
G176700 NA non-coding upstream 399095 16425670 ~ 16425881 (+)
G176692 NA non-coding upstream 415568 16335011 ~ 16409408 (+)
G176846 NA non-coding downstream 2581 16830650 ~ 16832355 (+)
G176847 NA non-coding downstream 28890 16856959 ~ 16868115 (+)
G176852 NA non-coding downstream 44788 16872857 ~ 16948550 (+)
G176874 NA non-coding downstream 193582 17021651 ~ 17024488 (+)
G176888 NA non-coding downstream 244444 17072513 ~ 17072918 (+)
fam136a fam136a,LOC102792467 other upstream 648 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 851319 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 2755614 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 2935932 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 2956121 13847262 ~ 13868855 (+)
G176882 inpp5j other downstream 214766 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 1310643 18138712 ~ 18174518 (+)
G177219 NA other downstream 1396204 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 1496804 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 1711829 18539898 ~ 18558444 (+)

Expression


Co-expression Network