G176896


Basic Information

Item Value
gene id G176896
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 17082828 ~ 17085248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239555
ttaatacatctatataatatatgaattttacacTTTGAACTGAATtcgtgaaataaagtaacttttcaatgatattgtaATTGTTTGAGAgttacctgtatgtgtgtgtgttaatatttTGATGGTAAGTATACTCACTGTTTGTGTGTTGCTGGGTGCTGCCCGACCCATTTGCTGGTTTCTGGGCTGCATTTTGTCCAGCTGGGCCGCGTCCAGCACACACTCCACGCTGACGCAGGTCCTGCTGACGCTCGGCTCGCTCACGGTCCCGCTGCTCTGAGggtccagacagaaacacacacacaactgtgaGAGCGCACAACatacacactaaataaaacatacacaaCACTGTGATTCCCAAAGCATCCCTATAATAAACAAACCCAAATTCATCACTGACTGATCTTAACAGATCATCACTACATTCATAACTGCAGAAATAAGAAGCACATACTGTAATTATTAATGTCTGTGATTATTACTGTCCGTGATTATTACTGTCAGTGATTATTAATGTCCGTGATTATTACTGTCAGTGATTATTAATGTCCGTGATTATTACTGTCAGCGATTAATATCGTTTGTGAATATCAATGTATGTGATTATTAATGTCCGTGATTATTACTGTCAGTGATTATTAATGTCCGTGATTATTACTGTCAGTGATTAATATCGTTTGTGAATATCAACGTACGTGATTATTAATGTCCGTGATTATTACTGTCAGTGATTATTAATGTCCGTGATTATTACTGTCAGTGATTAATATCATTTGTATATATCTATGTCTGTGATCATTAAAGTCCGTGattattaaccctttgaactctaggctgttttgctgtgctttttcttcgtttttgtcagttccccattcaggtcttataacacagtaattatatcagaccgacacatgccctgatctcatTTACTCTAGAAAccatacagctgctcaaaaatgtttagtttagctttagtttgagtaaagcaggtagtttccaACTTTTTCTGtgggacacttttgagtcatttactgattttatttggtttgaaacatcacataaatatgtttgaagcactaaaggtaaataatattggttggggaaggagatctcacttttttaggtgtttttctcaaaggGTTTCTTGTAGacgctttaccgcactgggatgtcatcactatctctagaaagagtaagttctgctCTTTCTAACCtaatatggattatgtttatgtgtgaatggattcctgagtaattaagctgaggatccgtctgtagggtGTAAAGGGTTATTGTCTGTGATTATTAATGTCTGTGATTACTaatgtctgtatatatatatatgaccctGTGCTGGACAGTGTGGATCTGTTGGCCATGTTTGGTCAGAAGTTCTGATTTGACCTTCAGCTCACCTCGCTTTCTCTTCATCAGCTCCCTCAGCGCCGCCCGAATCAACCTCCTCTCCTCAAAATCCACCGCCTTGTccatGTCATTCAGCACTTGTTCGTCCTGTATTGTGGCGAGTTGCTCCTGAGTTACTGGACCCGCAGCGACcaccttctcctcctctttaccgtccatccctctctccctctctccttcactccttcactccctctctccttcactccctcactccctctctttctctctccttcactccctcactccctctctaATTCACTCCTTAAATTATTCTCACCTTCACTCCTCCAGTCCTTCTTTCCTTTACTCCCTCACTCCTTCACTTCTTTGCTCCCTCAATCCCTCTCTCCCTTAATTCTACACTTCTTCACTCCTTCAGTCTCCCAgtccttctctctttcactcctttACTCCCTcacttccttctttttttctccctctcgctcactccttcactcattcactcctaCACTTCTTCACTCCTCCATTCCTCCAGTTCTGATTTCCTTCACTTCTTCACTTTTCTTCACTCCTTCACTTTTTCACTCCTTCCCCTTTACTTCTTCACTCCCTCACCCCTTCATTCCTGCACTCCTTTAGCCCTTCACTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239555 True 2048 lncRNA 0.41 4 17082828 17085248

Neighbor

gene id symbol gene type direction distance location
LOC103040133 LOC103040133 coding upstream 80599 16987210 ~ 17002229 (+)
ggcx ggcx,LOC107744113,LOC107569403,LOC107686456,LOC107688460 coding upstream 219950 16845946 ~ 16862878 (+)
slc20a1 slc20a1,slc20a1b,LOC107555522,LOC107687859,LOC107713386 coding upstream 314524 16736912 ~ 16768304 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding upstream 397346 16677496 ~ 16685482 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding upstream 427982 16565749 ~ 16654846 (+)
tctn1 NA coding downstream 231870 17317118 ~ 17330838 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding downstream 378753 17464001 ~ 17490044 (+)
LOC103023379 NA coding downstream 406965 17492213 ~ 17499861 (+)
LOC103021841 NA coding downstream 479666 17564914 ~ 17571469 (+)
itga1 itga1 coding downstream 562719 17647967 ~ 17702116 (+)
G176890 NA non-coding upstream 7457 17074065 ~ 17075371 (+)
G176888 NA non-coding upstream 9910 17072513 ~ 17072918 (+)
G176874 NA non-coding upstream 58340 17021651 ~ 17024488 (+)
G176852 NA non-coding upstream 134278 16872857 ~ 16948550 (+)
G176847 NA non-coding upstream 214713 16856959 ~ 16868115 (+)
G176898 NA non-coding downstream 11075 17096323 ~ 17100092 (+)
G176902 NA non-coding downstream 30590 17115838 ~ 17116113 (+)
G176931 nfkbil1 non-coding downstream 117635 17202883 ~ 17204573 (+)
G176932 nfkbil1 non-coding downstream 121033 17206281 ~ 17208292 (+)
G177027 NA non-coding downstream 159856 17245104 ~ 17245565 (+)
G176882 inpp5j other upstream 35839 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 258500 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 1109171 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 3013466 13951405 ~ 14069362 (+)
prdm15 LOC108413920,LOC106511912 other upstream 3213973 13847262 ~ 13868855 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 1053464 18138712 ~ 18174518 (+)
G177219 NA other downstream 1139025 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 1239625 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 1454650 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 2635053 19720301 ~ 19722560 (+)

Expression


Co-expression Network