G177123


Basic Information

Item Value
gene id G177123
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 17627081 ~ 17627359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239884
tgtgcaacataacaaaataaattataaaaaaaatacaggaacagtcatgtacaaaataacagaacaattAAAGCtgtaacaaactgaactctatcctactataacagttaaacatgaaaaataagactttaagactttttcggtccctgagaatgagaagtttttttctttaataaagatatattattaactttatctgagagaaagatgctccttaaggtaccaaaactattaatatatttgaggctagacaaaacaactgttatttttatattttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239884 True 279 lncRNA 0.26 1 17627081 17627359

Neighbor

gene id symbol gene type direction distance location
LOC103021841 NA coding upstream 55612 17564914 ~ 17571469 (+)
LOC103023379 NA coding upstream 127220 17492213 ~ 17499861 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding upstream 137037 17464001 ~ 17490044 (+)
tctn1 NA coding upstream 296243 17317118 ~ 17330838 (+)
LOC103040133 LOC103040133 coding upstream 624852 16987210 ~ 17002229 (+)
itga1 itga1 coding downstream 20608 17647967 ~ 17702116 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding downstream 554381 18181740 ~ 18212818 (+)
LOC103044456 NA coding downstream 608938 18236297 ~ 18252700 (+)
LOC103021446 NA coding downstream 704322 18331681 ~ 18337181 (+)
LOC103047729 NA coding downstream 711502 18338861 ~ 18347330 (+)
G177086 NA non-coding upstream 63190 17563633 ~ 17563891 (+)
G177068 NA non-coding upstream 77119 17548734 ~ 17549962 (+)
G177080 NA non-coding upstream 81111 17543550 ~ 17545970 (+)
G177070 NA non-coding upstream 135222 17488749 ~ 17491859 (+)
G177065 skiv2l2,LOC107571110,LOC107744101 non-coding upstream 174801 17448485 ~ 17452280 (+)
G177128 NA non-coding downstream 17443 17644802 ~ 17645712 (+)
G177132 NA non-coding downstream 19688 17647047 ~ 17647547 (+)
G177162 NA non-coding downstream 157555 17784914 ~ 17785180 (+)
G177169 NA non-coding downstream 201149 17828508 ~ 17830434 (+)
G177188 NA non-coding downstream 352794 17980153 ~ 17980385 (+)
G176882 inpp5j other upstream 580092 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 802753 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 1653424 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 3557719 13951405 ~ 14069362 (+)
prdm15 LOC108413920,LOC106511912 other upstream 3758226 13847262 ~ 13868855 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 511353 18138712 ~ 18174518 (+)
G177219 NA other downstream 596914 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 697514 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 912539 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 2092942 19720301 ~ 19722560 (+)

Expression


Co-expression Network