G177128


Basic Information

Item Value
gene id G177128
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 17644802 ~ 17645712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU239889
tagcaatTAGGCTTGGGCGATAATGTAAATTCAGACAAACGATTATCGTCACCAGAATTATCGCGATAAACGATAATATcgttaaaaatgaaagaaaaaagtacCCCACGCGACCGGATTTGCCCCTCCAGTACAACGACGTTTTCTCGCCATATAATCTAGCAGCCAGTaaatatgttacatttttttatttaattaccgACACATCCTGACAGGTAAGCATGCAAGTTATGCTTAAAAATAGTGCTTACAGGATGATGAAGTACATTTGCACGTGTTTCAGAGATGGTGTCAACCAGAACTTAAATATGACAGAAATATTTGAGACACTGTGTATAATGAACGACCTTAATGACAGCTTTTTTAAGTACAGACATAATATCACTGGGATTTGTAAAATTATAAGCCAGgcagaatgtttaaaatgaacattcaaATCGacatgtaaattaataaataatggagACAGTTCTTCAgtagaaaaatctaaataaagaaaacttaacagATTAAATTCGTCAATATTCAACatgtattttagattaataaaatggtaggtttaaaaaaggaactctttttttgcattaaggtaggcgtattatttttaaatatacagaaatctttaaattaataaataaaaacaccgaTGGTTTAACTTTAGGctataaaaaactgtaattataacTTTAACACAAAAGTGACAGACTGCGCTTAGTGCGCTATCCTTTGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239889 True 733 lncRNA 0.32 2 17644802 17645712

Neighbor

gene id symbol gene type direction distance location
LOC103021841 NA coding upstream 73333 17564914 ~ 17571469 (+)
LOC103023379 NA coding upstream 144941 17492213 ~ 17499861 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding upstream 154758 17464001 ~ 17490044 (+)
tctn1 NA coding upstream 313964 17317118 ~ 17330838 (+)
LOC103040133 LOC103040133 coding upstream 642573 16987210 ~ 17002229 (+)
itga1 itga1 coding downstream 2255 17647967 ~ 17702116 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding downstream 536028 18181740 ~ 18212818 (+)
LOC103044456 NA coding downstream 590585 18236297 ~ 18252700 (+)
LOC103021446 NA coding downstream 685969 18331681 ~ 18337181 (+)
LOC103047729 NA coding downstream 693149 18338861 ~ 18347330 (+)
G177123 NA non-coding upstream 17443 17627081 ~ 17627359 (+)
G177086 NA non-coding upstream 80911 17563633 ~ 17563891 (+)
G177068 NA non-coding upstream 94840 17548734 ~ 17549962 (+)
G177080 NA non-coding upstream 98832 17543550 ~ 17545970 (+)
G177070 NA non-coding upstream 152943 17488749 ~ 17491859 (+)
G177132 NA non-coding downstream 1335 17647047 ~ 17647547 (+)
G177162 NA non-coding downstream 139202 17784914 ~ 17785180 (+)
G177169 NA non-coding downstream 182796 17828508 ~ 17830434 (+)
G177188 NA non-coding downstream 334441 17980153 ~ 17980385 (+)
G177191 NA non-coding downstream 358008 18003720 ~ 18003980 (+)
G176882 inpp5j other upstream 597813 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 820474 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 1671145 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 3575440 13951405 ~ 14069362 (+)
prdm15 LOC108413920,LOC106511912 other upstream 3775947 13847262 ~ 13868855 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 493000 18138712 ~ 18174518 (+)
G177219 NA other downstream 578561 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 679161 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 894186 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 2074589 19720301 ~ 19722560 (+)

Expression


Co-expression Network