G177215


Basic Information

Item Value
gene id G177215
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18175476 ~ 18176766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240022
TttgaatattgattatttcttacaaatacaaaaagaaaaaaactctgaCCCTgaacaaataaatcaaaataggATTCCCTATTGAATCTGACACTCTTgtaattacaatttaaatacaTGTACTGAGGCATTACTGTCCATACCATGCCTCATACTCTTACCACAAATAGTAtgtagtataatattttttttctgtttttgttcatAGCTACTGTCGCACGGTTCGACAAACTTCATAgaacactgctaaaaaaaaaaaaaaacctgatttaacactaacaaaaCACCAAGCTCCGCCTCTCATTAGGGTGTAGGGATTGTCATATACACAGAGGGGGTGGACCTAGATTTtcttattaatagtaatatattcaccctaatatgaatataataataacgctaaaaatgtatgtattatgaTATATGCTgaggaggtggagctacagtctcattaatattaacatattcACCCTAATTAatgagactgCAGCTCTGCCCActtcagtgtatatcacaatacattattaatatatagtcACCCTAATTAAAAATGCAATCTAAACTGAGGTGggcattatttttaattagattagattagattattattattattagattattaattaattagtatttttactaatttttacgaatatgttaatatttataaccCTTTAAATGTAAGTATTGATATACACTGAAGTAGGCGGAGCTACAGTATCTCGTTATTTAGGGTGAATATAAcactaaatgtaggtattgtgatatacactaaAATAAGCAGAGCTACAGTATCTTTAATTAGGGTAaatatattagtattaataacACGTAGGTATTGTACACTAAGCATACActgaagtgggtggagctaaagtcTCTTATTAAAAGTTAAAGCAGATTTTTACCAGCATAATTTGAAGCTTGCCGAACAGAGTAATAGTATTTGTTGTACAGGAATACATTAGTGGGTGGAGTCTGAAGATGATAAGTCTAAAGCACCAACAGGAACAAGGCCACGGCAGCGTCACGGTTGGTGGTCGGGGCTAACATTTGTCTTTCTTCTGCTGTTTGGCCTTCACTCCGGCGCTGTGAACCACGTTGTTGTATCCTTCTCTGTTTCTGGCGATCTCTACAGCGAAAAACTGGATTCTGGTGGCTGAAACAGAAATTACGTTTAATTTGCTCAAAGTTCAGACCAGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240022 True 1206 lncRNA 0.34 2 18175476 18176766

Neighbor

gene id symbol gene type direction distance location
itga1 itga1 coding upstream 473360 17647967 ~ 17702116 (+)
LOC103021841 NA coding upstream 604007 17564914 ~ 17571469 (+)
LOC103023379 NA coding upstream 675615 17492213 ~ 17499861 (+)
dhx29 dhx29,LOC107562543,LOC107571104 coding upstream 685432 17464001 ~ 17490044 (+)
tctn1 NA coding upstream 844638 17317118 ~ 17330838 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding downstream 4974 18181740 ~ 18212818 (+)
LOC103044456 NA coding downstream 59531 18236297 ~ 18252700 (+)
LOC103021446 NA coding downstream 154915 18331681 ~ 18337181 (+)
LOC103047729 NA coding downstream 162095 18338861 ~ 18347330 (+)
letm2 letm2,LOC107586128,LOC107705077,LOC107678006,LOC107687501 coding downstream 348099 18524865 ~ 18537048 (+)
G177203 NA non-coding upstream 70363 18103086 ~ 18105113 (+)
G177201 NA non-coding upstream 77289 18097911 ~ 18098187 (+)
G177198 NA non-coding upstream 94756 18080009 ~ 18080720 (+)
G177191 NA non-coding upstream 171496 18003720 ~ 18003980 (+)
G177188 NA non-coding upstream 195091 17980153 ~ 17980385 (+)
G177216 NA non-coding downstream 72662 18249428 ~ 18258855 (+)
G177240 NA non-coding downstream 131126 18307892 ~ 18309648 (+)
G177257 NA non-coding downstream 228247 18405013 ~ 18464234 (+)
LOC111195058 ddhd2,LOC106583313 non-coding downstream 282292 18459058 ~ 18466201 (+)
G177274 NA non-coding downstream 293170 18469936 ~ 18472897 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 958 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1128487 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 1351148 16820935 ~ 16824328 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 2201819 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 4106114 13951405 ~ 14069362 (+)
G177219 NA other downstream 47507 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 148107 18324873 ~ 18330489 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 363132 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 1543535 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 1574176 19750942 ~ 19775791 (+)

Expression


Co-expression Network