LOC111195058 (ddhd2,LOC106583313)


Basic Information

Item Value
gene id LOC111195058
gene name ddhd2,LOC106583313
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18459058 ~ 18466201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240089
TGAGCaatcttcattattttttcatggaaaaattacaaaaacactgGTTATGGTTACAGAGGCAATAAATAGTGTTTACACACATAAATGAGGTTCAGTTTACACAGCGGGGCAGACTGAGCGCAgggtctccattgttcagctcatCTTCACGATACTGACAGGTGAAACCCAGCACTCATGTCTACCTCCTACTGCAGGGGCTGCTCCAGCACACCTGGCACATCTGGCCAGGTTATTACAGCCCTTGCGAGCTGGTTCAGGCATGCCGGAGCAGGGTAATGCACACGTGCCATACGTCAGGTCTCAGAACCCGAGATGGAGGTTCTGATTTAGTGTTAGGGGCTGAGAGGAAAACCTGGAACGGATCACTGGCCTCGCTGAAAACGTGGCAAAGAAAAACAGAGGTACTCAAACCTGGATCACGGATCCAAATGCGGTTCTGCTTATCTGATCACTGGCAGGTCATTAACGGAATAATCCATCCAGTGTTTCTCAGTCTAATCCTGATCTGATTAATCTGTAGCTCATAATTATTTAGCACAGACAGCTGGTTTAACAGCTCGTCTCCCTGAActtaaaacagaacagaaaacctGCTGACGTTCTGCTGAGAACCAGACGTTGCCAGATCAGATCAGTATTGAACATTACTCAACATTAAAGAACTTTGAATGGGTAATTGGACAATACTGAGAATTAAGATACATGGATCATAACAGTACTGAGCGTTACTCAACATTGGAGTACTTGAATTGGATCGGTATTTACCTATACTCAATATTAAAGTACTTTGATCAGATCAGTATTCATCAATATTCAGAATTAAAATACTCTGAACAGACttctattaaataataatctaCATTAATGTACTCGGGTCAGATCAGTATTTACCGATACGCAACATTAAAGTACTCGAATTGGGTTGGTATTAATTACTCAACAAGTATTCTGATTAGATTGGTACTGGACAACATTGGTTGTAATCGATACTCAAAATTAAAGTACTTTTATCAGATCGGTATTAACCGATATTCAGAATTAAAATACACTGAAGAGACTGCTACGGAATGATACTCTACATTATGGTACTTGTATCAGATTTTTATTGAACAATAATTAGCATTAAAATACTTGGATTAGGTTGCTATTGGACGATACACTGTGTTAAAGTACTTAGATCAGATTTCTATTGAACGCTATTTAGCATTAAGTACTTGGTTCAGATTGGTGTTGGACGATATTCTGCATTGATACTTCGAGATTAAATACATAGATCAGATTGGAGAAGCAAAAACTGGATTAGGACTCTCACTCGCACTTGTTTAGCAGGTTTTCTGTTTGTCACGTCTTTACAAATATGattatgttttcattttaaaccaTCTTTAATTGTGCTTTGGATCTGCTTAGCTAAAATTACATGTTGTTTCTGGCTGTCCAGATTTCGCTGATGTCAGAGTAAGTTCAGGGAAACGTGGTAAAATCACAGTCTGTGAAAAAGATCTGAATAACCAAGATTAGCTGTTGTTGAAAACTGTTGTTGTTCCCCTTTTTTAACCAGTTTGTGCTGCTGGTTTTATGCAGGTTAGGGGACTGGAAGTCACACTTGGCCCATCAGGACAGGAAGCGGAGTATTGCCAGTCAGTGGTTACATATGTAAACATCAACATGGAGCACAAGCGAGCACACAAGGTTTTGGCAGTGTAACACCACACGTcttcattacacacacagaagacTCCTGGACTGGACCTGCTACTGCTGAGCAGAAGTTCCGGACGGACCGTTCCCGTAGATCTCCTTCAGAACCAGCAGCGCTGTGTCTTCAGACTccctgcagaaataaataagcaGTGTTTATAAGATGTTCTACAGcaggagatgctaggctaacactGCACTTATATGGTCAGGACTGCTGGTATcaccagctctgatacatcagctaacagacgcctgtaCCAACCAGCATCAAaatgggagtgatgaggggggAGAGCACCACCTACTGTACTAGTATACCTAACCAGAGAAAAACAGCATCATCTTCggtactatctctctctcagactccggctgctgatggagaagcagcataatCTTACTGtacactctctcagactccggctgctgatgtagaagcagcatgacttactgtactctgtgtctgtgtgtctgtctcacCAGTAGCACAGGTGACTCTGGATGGCGAACAGGTACTCGTTAAAGCTCTCGATCGGTGTCTCCTGAAGGACGTAATCAATCCGTCGACCACCGTTCAGCTTCCCTACAGTCACCTCCTTCCTGTCCTCGTTCTCCATCACAGACGctgaaaaaaaaggacaaaggaGTCTTATTCTATTCACAATACTTCTGTACttctgcacatctgtgtcagcagcaaTGGATGCcatctctctgggtgtgtagatggcgctctttcccctaatcactcctagggtgatgtggatcagcacaaggcgtctgtgagctgagtctctgcgctttcctccgagcacgctgtgatgctactctgtaatgctgcatcagcagtaaTGCgtaaagaggcggagtctgacttcacatgtatcaaggagatgtgctgctgctgctgtagcgcCCCCTTCAGCCAATGCTGGAACAGGCAGCTGGGAAAAGCTCTGCCACACCGTCCGTAACGAGCCCAGAAGATCCGAACCCACGCGAGTTAGACCCTCCTTCAGCTCtgttacaGATGGAAGATGTTGTAGAAGCTCCTGCAGGTGGGGAAGCTGTAGTTGGGGTGGATCCTCTTCAGCCCTCTGACTGTCAGGAACATTCCTATGGGTGATCCGAAGGCGAAGAAGGCCTGCGGGTGGAACACCAGCTGGGGATTCTCATGCTAAATGATTTGAGGAGGGAGGACTGTCTtacaaacccaaacaaacagagagTGGACAGTTATACTCTCTGGGACTTCCACACTCCCAATCACTGACGTATGGCTGGGGTATCACCAGCGAACTCCCGAGAACAGAGTCAACACTTAAACGGCTGCTCCATTCAGAGTCCCAATAAGTGAACTATAATCTAAGAGGTACTGACCCAGACTGTGCCCGGCCACAGACACGGCGCCGGAGAAGTTTGGGTGCCGGAGCAGAAACAGGCTGTGCAGGCGGTTTATCTCAGACGCTACTGTGTCCACTATGGTCTGGCAGTAGGTGGGGCTGTTGTAGAAGAACAGGTCCAGCACCGTGTCATTGCTGAACTGTCTCAGACGGCTGATGCTGGGCAACGTGATCCGCTCGATATCT
>XR_002651449.1
CAGCTGGGAAAAGCTCTGCCACACCGTCCGTAACGAGCCCAGAAGATCCGAACCCACGCGAGTTAGACCCTCCTTCAGCTCtgttacaGATGGAAGATGTTGTAGAAGCTCCTGCAGGTGGGGAAGCTGTAGTTGGGGTGGATCCTCTTCAGCCCTCTGACTGTCAGGAACATTCCTATGGGTGATCCGAAGGCGAAGAAGGCCTGCGGGTGGAACACCAGCTGGGGATTCTCATGCTAAATGATTTGAGGAGGGAGGACTGTCTtacaaacccaaacaaacagagagTGGACAGTTATACTCTCTGGGACTTCCACACTCCCAATCACTGACGTATGGCTGGGGTATCACCAGCGAACTCCCGAGAACAGAGTCAACACTTAAACGGCTGCTCCATTCAGAGTCCCAATAAGTGAACTATAATCTAAGAGGTACTGACCCAGACTGTGCCCGGCCACAGACACGGCGCCGGAGAAGTTTGGGTGCCGGAGCAGAAACAGGCTGTGCAGGCGGTTTATCTCAGACGCTACTGTGTCCACTATGGTCTGGCAGTAGGTGGGGCTGTTGTAGAAGAACAGGTCCAGCACCGTGTCATTGCTGAACTGTCTCAGACGGCTGATGCTGGGCAACGTGATCCGCTCGATATCTCTGTTTAACAGGAGAAGAGGGACACTCGGGTTAACCAAGGATGAATACAGAATACAGgaagaatatttttaaacatttttatacatgtttaaaaCCTCTTTAGTAACACACTGTTGGGAtcaatttaaaaagataaaattaaaaataaagatacaaaTACATTATTGTT

Function

symbol description
ddhd2 Predicted to enable phospholipase activity and triglyceride lipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 54. Orthologous to human DDHD2 (DDHD domain containing 2).

NR:

description
PREDICTED: phospholipase DDHD2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240089 True 3299 lncRNA 0.45 4 18459058 18466032
XR_002651449.1 False 817 lncRNA 0.48 3 18461871 18466201

Neighbor

gene id symbol gene type direction distance location
LOC103047729 NA coding upstream 111728 18338861 ~ 18347330 (+)
LOC103021446 NA coding upstream 121877 18331681 ~ 18337181 (+)
LOC103044456 NA coding upstream 206358 18236297 ~ 18252700 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding upstream 246240 18181740 ~ 18212818 (+)
itga1 itga1 coding upstream 756942 17647967 ~ 17702116 (+)
letm2 letm2,LOC107586128,LOC107705077,LOC107678006,LOC107687501 coding downstream 58664 18524865 ~ 18537048 (+)
LOC103044763 NA coding downstream 94138 18560339 ~ 18563776 (+)
LOC103027413 LOC103027413,LOC108440158,LOC103369922 coding downstream 172717 18638918 ~ 18645170 (+)
LOC103045675 LOC108440144,LOC100694769,LOC101477777,LOC102295999,LOC102799311 coding downstream 224731 18690932 ~ 18738736 (+)
anxa4 anxa4,LOC107746213 coding downstream 326168 18792369 ~ 18806551 (+)
G177240 NA non-coding upstream 149410 18307892 ~ 18309648 (+)
G177216 NA non-coding upstream 200203 18249428 ~ 18258855 (+)
G177215 NA non-coding upstream 282292 18175476 ~ 18176766 (+)
G177203 NA non-coding upstream 353945 18103086 ~ 18105113 (+)
G177201 NA non-coding upstream 360871 18097911 ~ 18098187 (+)
G177274 NA non-coding downstream 3735 18469936 ~ 18472897 (+)
G177283 NA non-coding downstream 14303 18480504 ~ 18482101 (+)
G177279 NA non-coding downstream 19506 18485707 ~ 18490606 (+)
G177282 whsc1l1,LOC107720716,LOC107678004 non-coding downstream 26805 18493006 ~ 18494787 (+)
G177289 whsc1l1 non-coding downstream 41023 18507224 ~ 18568326 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 128569 18324873 ~ 18330489 (+)
G177219 NA other upstream 232925 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 284540 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1412069 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 1634730 16820935 ~ 16824328 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 73697 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 1254100 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 1284741 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1623037 20089238 ~ 20096711 (+)
G177950 NA other downstream 1672621 20138822 ~ 20139564 (+)

Expression


Co-expression Network