G177283


Basic Information

Item Value
gene id G177283
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18480504 ~ 18482101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240116
CTTTGAGCGAGCAGACTTACAGGAAGacagccagcagcagcagccggaCGATAACTTCAGAGATAAACCCACTGTCCAcactcttcctcatcttcaGGCCAGGTGTGTTACCGCTGTCTGCTCCACCTGAAGCCTtcatcatcatcatcatcctcctcctcctcggctTTTGTCCGGTTCGCACAGTTTCGTACAGACCTCCGTTCCCGCTCCGCCTGCGGTTAAACCGGCGCCGCACTGCGCTGCTGGGCTCCGGCATGCGCCTCTCACCGACTCTCAGGCAAAAACATCGCAGAAAAATTCGTTAAAAAGCGAAAATCATCCCCttcatcctcctcatcctcatctcAAACCTGTAGGGGAAGAAAACCGGACTGGCGGGTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240116 True 387 lncRNA 0.55 2 18480504 18482101

Neighbor

gene id symbol gene type direction distance location
LOC103047729 NA coding upstream 133174 18338861 ~ 18347330 (+)
LOC103021446 NA coding upstream 143323 18331681 ~ 18337181 (+)
LOC103044456 NA coding upstream 227804 18236297 ~ 18252700 (+)
LOC103045166 LOC108440562,LOC108276891,LOC107586118,LOC107687659 coding upstream 267686 18181740 ~ 18212818 (+)
itga1 itga1 coding upstream 778388 17647967 ~ 17702116 (+)
letm2 letm2,LOC107586128,LOC107705077,LOC107678006,LOC107687501 coding downstream 42764 18524865 ~ 18537048 (+)
LOC103044763 NA coding downstream 78238 18560339 ~ 18563776 (+)
LOC103027413 LOC103027413,LOC108440158,LOC103369922 coding downstream 156817 18638918 ~ 18645170 (+)
LOC103045675 LOC108440144,LOC100694769,LOC101477777,LOC102295999,LOC102799311 coding downstream 208831 18690932 ~ 18738736 (+)
anxa4 anxa4,LOC107746213 coding downstream 310268 18792369 ~ 18806551 (+)
G177274 NA non-coding upstream 7607 18469936 ~ 18472897 (+)
LOC111195058 ddhd2,LOC106583313 non-coding upstream 14303 18459058 ~ 18466201 (+)
G177257 NA non-coding upstream 16270 18405013 ~ 18464234 (+)
G177240 NA non-coding upstream 170856 18307892 ~ 18309648 (+)
G177216 NA non-coding upstream 221649 18249428 ~ 18258855 (+)
G177279 NA non-coding downstream 3606 18485707 ~ 18490606 (+)
G177282 whsc1l1,LOC107720716,LOC107678004 non-coding downstream 10905 18493006 ~ 18494787 (+)
G177289 whsc1l1 non-coding downstream 25123 18507224 ~ 18568326 (+)
G177281 whsc1l1,LOC107678004,LOC107720716 non-coding downstream 31463 18513564 ~ 18515921 (+)
G177298 pcna,LOC107658578,LOC107583397,LOC107688976 non-coding downstream 122443 18604544 ~ 18609129 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 150015 18324873 ~ 18330489 (+)
G177219 NA other upstream 254371 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 305986 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1433515 17042835 ~ 17046989 (+)
fam136a fam136a,LOC102792467 other upstream 1656176 16820935 ~ 16824328 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other downstream 57797 18539898 ~ 18558444 (+)
LOC111194983 NA other downstream 1238200 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 1268841 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1607137 20089238 ~ 20096711 (+)
G177950 NA other downstream 1656721 20138822 ~ 20139564 (+)

Expression


Co-expression Network