G177349


Basic Information

Item Value
gene id G177349
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18845695 ~ 18847305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240232
TACCTTTAATAAGATTGGGACAGGGTTTCTTGCTGGTCTCAGTGCTCTCGTAATACGGCACAGTGCGGCTGTGTTGCTCGTCACTGAGGGTGGTGGTGAAGACACCCTCTGATACCAGTGAGCCGCAGTCCTCACACACCCACTGCTTCTGAGAGTACAGATCATCCTCCACCACGTTACTTGACCCGCACTCAGGACAGGGGCCCACCATAGCTCACCGCGGAGCTTCAGTACAGAATAGTAAATCCAGAAAtcccaaaaatattaaattaataataaacagcgGAAAATGTTTACGCTCGCCCTGCGTACTGTCCACATACCGGCCGCTCCGGGCGGAAACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240232 True 347 lncRNA 0.51 3 18845695 18847305

Neighbor

gene id symbol gene type direction distance location
LOC103046295 prlhr2b,LOC108440160,LOC107746212,LOC107558127,LOC107583448,LOC107689875,LOC107758612 coding upstream 5271 18835816 ~ 18840424 (+)
LOC103028061 NA coding upstream 16453 18817912 ~ 18829242 (+)
anxa4 anxa4,LOC107746213 coding upstream 39144 18792369 ~ 18806551 (+)
LOC103045675 LOC108440144,LOC100694769,LOC101477777,LOC102295999,LOC102799311 coding upstream 106959 18690932 ~ 18738736 (+)
LOC103027413 LOC103027413,LOC108440158,LOC103369922 coding upstream 200525 18638918 ~ 18645170 (+)
LOC103046599 NA coding downstream 109389 18956694 ~ 18984284 (+)
LOC103046910 NA coding downstream 163568 19010873 ~ 19030800 (+)
ess2 dgcr14,LOC107758656,LOC107746196 coding downstream 185755 19033060 ~ 19037673 (+)
LOC103031227 orai1b,LOC103031227,LOC108425168,LOC107746203,LOC108276842,LOC107602056,LOC107689140,LOC107758661 coding downstream 201622 19048927 ~ 19052826 (+)
tmem120b tmem120b,LOC103032067,LOC107689172,LOC107758658,LOC107658534,LOC107746200 coding downstream 209726 19057031 ~ 19062255 (+)
G177324 NA non-coding upstream 144006 18700992 ~ 18701689 (+)
G177314 bmp1,LOC108440159 non-coding upstream 194156 18648763 ~ 18651539 (+)
G177300 NA non-coding upstream 197592 18645627 ~ 18648103 (+)
G177298 pcna,LOC107658578,LOC107583397,LOC107688976 non-coding upstream 236566 18604544 ~ 18609129 (+)
G177289 whsc1l1 non-coding upstream 277369 18507224 ~ 18568326 (+)
G177392 NA non-coding downstream 168080 19015385 ~ 19016720 (+)
G177397 NA non-coding downstream 193830 19041135 ~ 19042186 (+)
G177401 NA non-coding downstream 196402 19043707 ~ 19045097 (+)
G177402 LOC108425167,LOC105014887 non-coding downstream 197875 19045180 ~ 19046232 (+)
G177414 NA non-coding downstream 200712 19048017 ~ 19048370 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 287251 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 515206 18324873 ~ 18330489 (+)
G177219 NA other upstream 619562 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 671177 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1798706 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 872996 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 903637 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1241933 20089238 ~ 20096711 (+)
G177950 NA other downstream 1291517 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1549072 20396377 ~ 20399165 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00372066_00382393 NA coding CI01000158 null 371945 ~ 382393 (-)