G177392


Basic Information

Item Value
gene id G177392
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19015385 ~ 19016720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240286
TTGTAGcgggctcagtggtttaatacctggtgctaattgagatgttgaaatatttttaattgggcgccagttattaaattaatttaattagattaattaattaattaattaattaattaatcaaattaattaataacacaagacatctcagggtgtggtttctacaggtgacagaaattttcataaccaagttatccagaaaaacacactgaaattacaggttttgtaaaataaaagtattttattaaatcacacagatatgagtaaataattaattaaaaagtcataatgtagccattagatatcaaatcatagtgtagaataataaatgaaaaataaaagaacaaacacgttataatactggtatgaaaggaataaagattaatagaactattaagtgaatatttctaaataagggtctTAATGTAATGAGGTCAAACTAATCAAATGAGAACACTAAAATAAGTAGATAAGTAAGATATTTTACGGCCTACAAAGATCATCCCTTTCgccaaataactaaaaatgaatCTATACTAAGAAAAGAGTTAAGGACAATAACCAAACTAGACTTGACCAACCAAAACACCAATTACTGAGAGAAATACCCAAACTGCCTTACTCTGAGACGTCTACAAAGGGGGTCCCCATCGGTTCGGTCCGCTGTTTAAACCTCTTGTTCGGCTGACATCCTGCACCCCTAGAAGGTCCAGTGTGGACCCATCCGCAGGGTAAAGATGGTGCTCTGTGGGCCAGCGGCGCACCTGGTCGACACCCACTTCTAGTCTCTGCACAGGAAAGCCTTCCCTGGAGCTGGCTCGGCTGGCGTACCCTCTCGGTGATCCGTCGGTTGGTCTAGTTGGTTTACTGAACTATATTAACTATCTTGGCAAGCAGGAGAACTCCGTAGATCATAAAATAGCTTAGTTATTTAAACTAGGATAACTAATACCATTATGCTTGAagaagattaaatgcactagtctaagaaaactaacCTAAGATGACTAACTAACAGTTTATCCTTTCTTCATCTCTAGGCCCTctctaacctctctcctctaacttcTCTCTTCTAACTGCTTCCTTCAACCCATCTTCTTCCACTCTCCTCAACtccaaactgaactgGAAACTCTAAACTGGAAAACTGAACTGTGTCTGCCCAGTTTAACTATTAgactctgtggcctgtttggcccctgagctatgattggccctgtggcccaaatgtctgtgttttgattggtctaggagcaatttcaaactttggcAGGGAAGATCTt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240286 True 1286 lncRNA 0.38 2 19015385 19016720

Neighbor

gene id symbol gene type direction distance location
LOC103046599 NA coding upstream 31101 18956694 ~ 18984284 (+)
LOC103046295 prlhr2b,LOC108440160,LOC107746212,LOC107558127,LOC107583448,LOC107689875,LOC107758612 coding upstream 174961 18835816 ~ 18840424 (+)
LOC103028061 NA coding upstream 186143 18817912 ~ 18829242 (+)
anxa4 anxa4,LOC107746213 coding upstream 208834 18792369 ~ 18806551 (+)
LOC103045675 LOC108440144,LOC100694769,LOC101477777,LOC102295999,LOC102799311 coding upstream 276649 18690932 ~ 18738736 (+)
ess2 dgcr14,LOC107758656,LOC107746196 coding downstream 16340 19033060 ~ 19037673 (+)
LOC103031227 orai1b,LOC103031227,LOC108425168,LOC107746203,LOC108276842,LOC107602056,LOC107689140,LOC107758661 coding downstream 32207 19048927 ~ 19052826 (+)
tmem120b tmem120b,LOC103032067,LOC107689172,LOC107758658,LOC107658534,LOC107746200 coding downstream 40311 19057031 ~ 19062255 (+)
setd1b LOC108425171,LOC107689149,LOC107658592,LOC107746221,LOC107558115 coding downstream 63068 19079788 ~ 19099415 (+)
LOC103034500 NA coding downstream 117391 19134111 ~ 19137723 (+)
G177349 NA non-coding upstream 168080 18845695 ~ 18847305 (+)
G177324 NA non-coding upstream 313696 18700992 ~ 18701689 (+)
G177314 bmp1,LOC108440159 non-coding upstream 363846 18648763 ~ 18651539 (+)
G177300 NA non-coding upstream 367282 18645627 ~ 18648103 (+)
G177298 pcna,LOC107658578,LOC107583397,LOC107688976 non-coding upstream 406256 18604544 ~ 18609129 (+)
G177397 NA non-coding downstream 24415 19041135 ~ 19042186 (+)
G177401 NA non-coding downstream 26987 19043707 ~ 19045097 (+)
G177402 LOC108425167,LOC105014887 non-coding downstream 28460 19045180 ~ 19046232 (+)
G177414 NA non-coding downstream 31297 19048017 ~ 19048370 (+)
G177411 NA non-coding downstream 58647 19075367 ~ 19078352 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 456941 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 684896 18324873 ~ 18330489 (+)
G177219 NA other upstream 789252 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 840867 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1968396 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 703581 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 734222 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1072518 20089238 ~ 20096711 (+)
G177950 NA other downstream 1122102 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1379657 20396377 ~ 20399165 (+)

Expression


Co-expression Network