G177397


Basic Information

Item Value
gene id G177397
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19041135 ~ 19042186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240291
TTCCAGGTCCTGCAGACGcgcatacacatacacagctcGCTGTACTGCAGGTAACTGAACACACCCATCCACTCCTCCCTGCCAATCACGTGGCTCCGGCCATCATTCAGTGGAAGGCGGTCCGGTGGGGGGCAGATGGGCGGCGGCCTGATGACATGCCGTTCCACCTGAGCGCAGTTGGGCTGGTGTAAGGAGGTGGTGGCAGCTGAAGGCGGACCCTTATTTGCTGGAGGCTCCTCCCCCCTCTGGTTCCTCCTTGGGTCCAAGCCAGTCGCCCAGGCAACCGTTTCCAGACAGCACTCCGTACTGGCCCCACCTCCCCTCGGCCTTCTGGAGTTCCTGCTTCAGCCGTTTGCTCCTGGGCTTAAGCTGTCTGTCAGCATCCTCCTCGCCACAGGATTGGCTGTTATCATGCGATGCTGACGTCCTGTTTGGAGAAATGGAGGTGTGGTTAACTctagctcctcctcctccaaacCTGTTTTTCACTGCATCTTCATCTCTGTGCTCCACGTTTTTCTGGCCGATGTCTTCATCACTTTGCTCCTCCTTGATTGGCCTCTCCTccttcccactctctctcttaacTCGCTTGGCCGGTTTGGTCTTCTTCTTCTTTCTCCTGGGCTCTGAGTCCTTACAGCACCTCCTCTTCCTGTTCAcaggctcctcctcctcctcctccactttGGGCTTCAGCACAGGTGATGACCCCAGAAAGGGGAGGGGTTTCTGATTGGCATCGTCAGGCTTGCTAATGGGCGTGTCCTCTGGCTCTGTTTTCTGATTTAATGCTGAGGAATCAGCGAACGAGTCACAGGTAATTTCTGTAGTTCGGTTAATATCCAGTTTGTCTGTCAGGTCCGGTTGGGGGCGGGGCTTGGCTACAGAACCTGGGAGGGTAGGTGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240291 True 913 lncRNA 0.56 2 19041135 19042186

Neighbor

gene id symbol gene type direction distance location
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 3462 19033060 ~ 19037673 (+)
LOC103046910 NA coding upstream 10335 19010873 ~ 19030800 (+)
LOC103046599 NA coding upstream 56851 18956694 ~ 18984284 (+)
LOC103046295 prlhr2b,LOC108440160,LOC107746212,LOC107558127,LOC107583448,LOC107689875,LOC107758612 coding upstream 200711 18835816 ~ 18840424 (+)
LOC103028061 NA coding upstream 211893 18817912 ~ 18829242 (+)
LOC103031227 orai1b,LOC103031227,LOC108425168,LOC107746203,LOC108276842,LOC107602056,LOC107689140,LOC107758661 coding downstream 6741 19048927 ~ 19052826 (+)
tmem120b tmem120b,LOC103032067,LOC107689172,LOC107758658,LOC107658534,LOC107746200 coding downstream 14845 19057031 ~ 19062255 (+)
setd1b LOC108425171,LOC107689149,LOC107658592,LOC107746221,LOC107558115 coding downstream 37602 19079788 ~ 19099415 (+)
LOC103034500 NA coding downstream 91925 19134111 ~ 19137723 (+)
LOC103033969 NA coding downstream 108223 19150409 ~ 19157103 (+)
G177392 NA non-coding upstream 24415 19015385 ~ 19016720 (+)
G177349 NA non-coding upstream 193830 18845695 ~ 18847305 (+)
G177324 NA non-coding upstream 339446 18700992 ~ 18701689 (+)
G177314 bmp1,LOC108440159 non-coding upstream 389596 18648763 ~ 18651539 (+)
G177300 NA non-coding upstream 393032 18645627 ~ 18648103 (+)
G177401 NA non-coding downstream 1521 19043707 ~ 19045097 (+)
G177402 LOC108425167,LOC105014887 non-coding downstream 2994 19045180 ~ 19046232 (+)
G177414 NA non-coding downstream 5831 19048017 ~ 19048370 (+)
G177411 NA non-coding downstream 33181 19075367 ~ 19078352 (+)
G177439 NA non-coding downstream 128887 19171073 ~ 19171523 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 482691 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 710646 18324873 ~ 18330489 (+)
G177219 NA other upstream 815002 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 866617 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 1994146 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 678115 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 708756 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1047052 20089238 ~ 20096711 (+)
G177950 NA other downstream 1096636 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1354191 20396377 ~ 20399165 (+)

Expression


Co-expression Network