G177411


Basic Information

Item Value
gene id G177411
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19075367 ~ 19078352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240311
aaatgcaaagaaaaacaaaccaattgaaaatatatatataagattaaCATAAAACAGTATGTGTATAGTGCAAAGTATGTGCAGGTATggtaaaaataatgttattcCTATGCCTAATGGCTATATaacagtaaaatgttttttattgtcatcaTTGTTACCTTATCAATAAAAACAGGCAGTCCCCAGCCCACAGATGGAAATGTGAACATGCTGCTGTCTAAAAAATGAACAGCAAATGCTTGagcaggaaaaagagagagagactgaaggaAGGGCGAGGAGACAGtgagaaggaaaaagagagagagatgatttgcatatctattttctgtaaaagTAATTTTTGCAGCTGATTTGCAGCAGTTTGGCTCCTCAGTCTGCGCTCTGTGGCTCCTTCACtgctgatattttatttttaatatgaattgaTAAAGGAGGATTTAGAGCGGGTCTGACCTCCTTTTATCTAAATCAGTCGAGTTACAGGACGGCGATGGGAGTGAAAGCGTACAGTCTCCTGCCTTTAGGCCTGATAAAATTATTTCAGCAGAAAGGCGAAGGTAAATATCCTCAATGGGCTTTTTACGGGTTGTGTTCTCGGGCTGATCTCGgtggttcagcagcagcagggtaGATAATGTTCTGCAGGATGAGGGGAAAATTACAGATATGAGAATGTGCCCTTGACTCAAGGTCAAACGGGTTAAGAATGCTTTAGAAAGAATTTTAAttgtcttattttttgttttgaagtACGACTGATggattattaatatcattacaTAATCCTGAAAAAGTCCTTTACTGTAGTAAACACTACTAGGAGATTAATCAACTGAATAAACAGGCTgatcaataaaaacacagtggcAGTTTCTGTAAAACGAGTTACAGGGTTTTAGCAGAACAACCACAGGCTGTGATTCAGCATTTCTTCCTTTCCTTTGTGAAAGGCCGTCGACCTTTTTTCCTCtggcctgatttttttttctgtttcctcTGAAATGAGTTTAAATAGATAAACAGCAGGCTGAGTGTAGAAAAATGAGAAAGGTAGAGAGCAGCCATCACTCAGTGCCATGTATCCTGAGGGACCAGagatataaaacaatacaaaagaaattaaaaatggtaaataataaaacagccaATCCAAGTGAagtttgtaataaaatatatttatatatgaatacACATTGACACAtctatacataataataataataataataataataataataataataaagataatagTGAACTTACTCTTAGGCACATTCACATGCTCGGCCTTGCGCAGGGGAGGGCCTGCCTACGCAGCTGATGGTAACATTTgcatgtgtatttttttctctttttctttctaaaacgTTTGTTTTTGTCAATCAGCTGTTTATTCAGTAGCATTTCACTGTGAGAAAGTAGAGTAAAATGCTGTGATATGGGTGTGCCATGACCTAGTTTGCCAGGACAAAGATGGATTcctggaaaaagagagaaaagagagagagaaagagagaggaaaaaagagaacaagtttaaaaaatgtcaaaggGATTCGGTCCAACATTTCTTCCTTCTTCTCAGATATCCTGCACTCAGAGAGACAGTATGTGTGATAGTCCGTCATGAGGAGCTGGAATGAAGCTTTAGATCCTTTTAGGAACAAAGGAACCGCATTAGGCCTCAGAGCGCGAGCTCAGCGCTCCCACTCTCTGCTGCACGAGCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240311 True 1738 lncRNA 0.38 2 19075367 19078352

Neighbor

gene id symbol gene type direction distance location
tmem120b tmem120b,LOC103032067,LOC107689172,LOC107758658,LOC107658534,LOC107746200 coding upstream 13112 19057031 ~ 19062255 (+)
LOC103031227 orai1b,LOC103031227,LOC108425168,LOC107746203,LOC108276842,LOC107602056,LOC107689140,LOC107758661 coding upstream 22541 19048927 ~ 19052826 (+)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 37694 19033060 ~ 19037673 (+)
LOC103046910 NA coding upstream 44567 19010873 ~ 19030800 (+)
LOC103046599 NA coding upstream 91083 18956694 ~ 18984284 (+)
setd1b LOC108425171,LOC107689149,LOC107658592,LOC107746221,LOC107558115 coding downstream 1436 19079788 ~ 19099415 (+)
LOC103034500 NA coding downstream 55759 19134111 ~ 19137723 (+)
LOC103033969 NA coding downstream 72057 19150409 ~ 19157103 (+)
LOC103036907 actr1,acty,LOC108425179,LOC103036907,LOC106585571,LOC105889177,LOC107602067 coding downstream 83262 19161614 ~ 19168529 (+)
kiaa1958 kiaa1958,LOC107683261,LOC106568575 coding downstream 114952 19193304 ~ 19209429 (+)
G177414 NA non-coding upstream 26997 19048017 ~ 19048370 (+)
G177402 LOC108425167,LOC105014887 non-coding upstream 29135 19045180 ~ 19046232 (+)
G177401 NA non-coding upstream 30270 19043707 ~ 19045097 (+)
G177397 NA non-coding upstream 33181 19041135 ~ 19042186 (+)
G177392 NA non-coding upstream 58647 19015385 ~ 19016720 (+)
G177439 NA non-coding downstream 92721 19171073 ~ 19171523 (+)
G177443 NA non-coding downstream 102759 19181111 ~ 19181650 (+)
G177445 NA non-coding downstream 110117 19188469 ~ 19188878 (+)
G177446 NA non-coding downstream 110721 19189073 ~ 19189729 (+)
G177448 inip,LOC107658659,LOC107558675,LOC107571239 non-coding downstream 132592 19210944 ~ 19213312 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 516923 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 744878 18324873 ~ 18330489 (+)
G177219 NA other upstream 849234 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 900849 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2028378 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 641949 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 672590 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 1010886 20089238 ~ 20096711 (+)
G177950 NA other downstream 1060470 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1318025 20396377 ~ 20399165 (+)

Expression


Co-expression Network