G177449


Basic Information

Item Value
gene id G177449
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19214411 ~ 19216120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240366
ttagacAGAAAAATAAGGTTTACAACAATAATGTGGGAGAATatagaattaaaaaagaaaataaaaaaaagaaaaagaacctTGATTTGATGTGTACAGAAATACAGCGAATGATCACGCCAACATATACAgcccaaaacaaacagaaaaaaagcaatCAAAATACACTAGTGCTGGTTAAGATTTTCCTTACATATCTgcaaacaataacaataatttattagttaGGTGGTCTAATTTGTGGCAAAGACGTTTCGTATTGCAATTTTACAAAAGGAGCACTACAGAtcttcatttcatttacatttatacatgtatattataGAAAAGTACATGGTCATATTATTTGGAAAAGAGGTGACAATTCGCCTGAAGAATGAACTGATTACACCCACCAAGAAGCCAAATCTAAAATatcatatacattttatattagtcTCTTAAACCACAGCTATTTTGTAGAGGATTCGATTGTGGGATCCGTTGCAGTAATCTGAACAAAAGTGAACCTCCACAAATCCCctaaaagacaaagacaaacgAGCAGATGCAGGCTTGGGATGGCGCAGGTGATGTTCTCGGGAAATCTGGATTGTAGCAGCTCACAGTGATTGTAAATCAGAAGGATAAATTATCAGACTAAAGTCCTCCATGAGGCAAGATCTAGCATccgtattgtgatattttagaatattatccaattttttaattatcaatttttacatgtaaagacAGTGGTTCACTTTGTGTTGTTTTAACTCTGACCACTAGAGGGCACTGTTGTACTCTTtcattagatcccactgttcttattagttagaaatgttacttttcttttttatttatttagttgtccaacataatataatgcaatatattaaatatactgaattgtattgtactgtattgtggTGCACATCACATATTGCCATGTTCTTGCCAGTACACAGCCCTACAATGAAGATGAACCTAAGAATGGGTAAAAATTGAGAATCTGCTATTAAAAAGTGGATGATACAGTTTGGTCCAAGCCCATTTCACTACTTCATCACAGTCCATCACATTCCAGCATACAAACCAACTGGTCTGACTACTTTCAAAGTTTCATACTATCAAAAGCAAACTACAGAAAAACCAACAACGCAAACCCTGAGCACTGAGGTGGCAATTAAGGCTTACCAGGATACATCAATTACACGATTCTTCTCATTCTTTGTGAGACACAGACTAacctgttttttgtgtttagaGGAAGAAGAGTCTGTAAAATTTGTCAGGAATTTCACATATATAACTTATTACAAATAACCAGAAACAAAATTGGAATGGTGATCTAGGACCAGTTTCTATCAGTAAGGTGGTCAAGGGATGTTCTTTGATATAATTAGAGAATAACATTGGTATTAGCACTACCATTAGCACCACTGGATTGCATTTATAATCtacatataattaaataattaaatatgtataatatgtgcCAAGATActatatttgtggacacccctttaaataaaaaatgcaagaagctgttttta
>TU240367
TTAACTCTTAAAGCAGAGTAGGAATTTTGTTCGTATGTAGTGTGTGCACAATACAATGAATACAAATCTTACTTTCCGAAATATTTGTTTggaattgttttctttttatttggagCGTCAGATACTTGGTGTTATCATATTAAGGAGAATAAACAGgagataaattaaataattagacAGAAAAATAAGGTTTACAACAATAATGTGGGAGAATatagaattaaaaaagaaaataaaaaaaagaaaaagaacctTGATTTGATGTGTACAGAAATACAGCGAATGATCACGCCAACATATACAgcccaaaacaaacagaaaaaaagcaatCAAAATACACTAGTGCTGGTTAAGATTTTCCTTACATATCTgcaaacaataacaataatttattagttaGGTGGTCTAATTTGTGGCAAAGACGTTTCGTATTGCAATTTTACAAAAGGAGCACTACAGAtcttcatttcatttacatttatacatgtatattataGAAAAGTACATGGTCATATTATTTGGAAAAGAGGTGACAATTCGCCTGAAGAATGAACTGATTACACCCACCAAGAAGCCAAATCTAAAATatcatatacattttatattagtcTCTTAAACCACAGCTATTTTGTAGAGGATTCGATTGTGGGATCCGTTGCAGTAATCTGAACAAAAGTGAACCTCCACAAATCCCctaaaagacaaagacaaacgAGCAGATGCAGGCTTGGGATGGCGCAGGTGATGTTCTCGGGAAATCTGGATTGTAGCAGCTCACAGTGATTGTAAATCAGAAGGATAAATTATCAGACTAAAGTCCTCCATGAGGCAAGATCTAGCATccgtattgtgatattttagaatattatccaattttttaattatcaatttttacatgtaaagacAGTGGTTCACTTTGTGTTGTTTTAACTCTGACCACTAGAGGGCACTGTTGTACTCTTtcattagatcccactgttcttattagttagaaatgttacttttcttttttatttatttagttgtccaacataatataatgcaatatattaaatatactgaattgtattgtactgtattgtggTGCACATCACATATTGCCATGTTCTTGCCAGTACACAGCCCTACAATGAAGATGAACCTAAGAATGGGTAAAAATTGAGAATCTGCTATTAAAAAGTGGATGATACAGTTTGGTCCAAGCCCATTTCACTACTTCATCACAGTCCATCACATTCCAGCATACAAACCAACTGGTCTGACTACTTTCAAAGTTTCATACTATCAAAAGCAAACTACAGAAAAACCAACAACGCAAACCCTGAGCACTGAGGTGGCAATTAAGGCTTACCAGGATACATCAATTACACGATTCTTCTCATTCTTTGTGAGACACAGACTAacctgttttttgtgtttagaGGAAGAAGAGTCTGTAAAATTTGTCAGGAATTTCACATATATAACTTATTACAAATAACCAGAAACAAAATTGGAATGGTGATCTAGGACCAGTTTCTATCAGTAAGGTGGTCAAGGGATGTTCTTTGATATAATTAGAGAATAACATTGGTATTAGCACTACCATTAGCACCACTGGATTGCATTTATAATCtacatataattaaataattaaatatgtataatatgtgcCAAGATActatatttgtggacacccctttaaataaaaaatgcaagaagctgttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240366 False 1538 lncRNA 0.33 1 19214583 19216120
TU240367 True 1710 lncRNA 0.33 1 19214411 19216120

Neighbor

gene id symbol gene type direction distance location
kiaa1958 kiaa1958,LOC107683261,LOC106568575 coding upstream 4982 19193304 ~ 19209429 (+)
LOC103036907 actr1,acty,LOC108425179,LOC103036907,LOC106585571,LOC105889177,LOC107602067 coding upstream 45882 19161614 ~ 19168529 (+)
LOC103033969 NA coding upstream 57308 19150409 ~ 19157103 (+)
LOC103034500 NA coding upstream 76688 19134111 ~ 19137723 (+)
setd1b LOC108425171,LOC107689149,LOC107658592,LOC107746221,LOC107558115 coding upstream 114996 19079788 ~ 19099415 (+)
cops4 cops4,csn4,LOC106562268 coding downstream 21315 19237435 ~ 19244587 (+)
fam159b NA coding downstream 36624 19252744 ~ 19254807 (+)
cwc27 cwc27,LOC102784682 coding downstream 45084 19261204 ~ 19325401 (+)
ppwd1 ppwd1 coding downstream 216367 19432487 ~ 19445658 (+)
trappc13 trappc13,LOC107667267 coding downstream 243836 19459956 ~ 19475177 (+)
G177448 inip,LOC107658659,LOC107558675,LOC107571239 non-coding upstream 1099 19210944 ~ 19213312 (+)
G177446 NA non-coding upstream 24682 19189073 ~ 19189729 (+)
G177445 NA non-coding upstream 25533 19188469 ~ 19188878 (+)
G177443 NA non-coding upstream 32761 19181111 ~ 19181650 (+)
G177439 NA non-coding upstream 42888 19171073 ~ 19171523 (+)
G177472 NA non-coding downstream 137848 19353968 ~ 19358749 (+)
G177479 NA non-coding downstream 181828 19397948 ~ 19401681 (+)
G177485 NA non-coding downstream 195506 19411626 ~ 19479842 (+)
G177506 NA non-coding downstream 278055 19494175 ~ 19494374 (+)
LOC111195062 NA non-coding downstream 310807 19526927 ~ 19551020 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 655967 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 883922 18324873 ~ 18330489 (+)
G177219 NA other upstream 988278 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1039893 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2167422 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 504181 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 534822 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 873118 20089238 ~ 20096711 (+)
G177950 NA other downstream 922702 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 1180257 20396377 ~ 20399165 (+)

Expression


Co-expression Network