G177479


Basic Information

Item Value
gene id G177479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19397948 ~ 19401681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240404
ttgcactgtcccccgttgtctgtctctctgcgtttctctgtctctctctgtgtttcttagcctctcagtgtttctttagtCATTGCCCTAGGtccttgtttagtgtttatctctgtttgtttctagtttCCATAGTTTACTCCATTTCCCTGTTTAGTGTATTCATcctctgtctagtttagtttcttgttttattttcttgtatatatatccctagtttattcccttgccctgtttaagttcatcctgtctagttttatagcctccttgtttatttatcattagtctctctctcttgtttattcctagtttatttttccagcgtttgtttcttgtttatcactagtacctcttgtttgtttaggtttatgttctctagtttcactcgtttgttttggtttttgattattcatttatctttgttacgtgtttacttgtttcattgtttatttgttatttatttattaaatcattcatctttcccttacctgcacctgtgtccgcctcctcgtctccctgcctgggtcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240404 True 529 lncRNA 0.36 2 19397948 19401681

Neighbor

gene id symbol gene type direction distance location
cwc27 cwc27,LOC102784682 coding upstream 72547 19261204 ~ 19325401 (+)
fam159b NA coding upstream 143141 19252744 ~ 19254807 (+)
cops4 cops4,csn4,LOC106562268 coding upstream 153361 19237435 ~ 19244587 (+)
kiaa1958 kiaa1958,LOC107683261,LOC106568575 coding upstream 188519 19193304 ~ 19209429 (+)
LOC103036907 actr1,acty,LOC108425179,LOC103036907,LOC106585571,LOC105889177,LOC107602067 coding upstream 229419 19161614 ~ 19168529 (+)
ppwd1 ppwd1 coding downstream 30806 19432487 ~ 19445658 (+)
trappc13 trappc13,LOC107667267 coding downstream 58275 19459956 ~ 19475177 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding downstream 101876 19503557 ~ 19522073 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 192420 19594101 ~ 19651418 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 495056 19896737 ~ 19918977 (+)
G177472 NA non-coding upstream 39199 19353968 ~ 19358749 (+)
G177449 NA non-coding upstream 181828 19214411 ~ 19216120 (+)
G177448 inip,LOC107658659,LOC107558675,LOC107571239 non-coding upstream 184636 19210944 ~ 19213312 (+)
G177446 NA non-coding upstream 208219 19189073 ~ 19189729 (+)
G177445 NA non-coding upstream 209070 19188469 ~ 19188878 (+)
G177485 NA non-coding downstream 9945 19411626 ~ 19479842 (+)
G177506 NA non-coding downstream 92494 19494175 ~ 19494374 (+)
LOC111195062 NA non-coding downstream 125246 19526927 ~ 19551020 (+)
G177819 NA non-coding downstream 337699 19739380 ~ 19739598 (+)
G177822 NA non-coding downstream 339943 19741624 ~ 19741851 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 839504 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1067459 18324873 ~ 18330489 (+)
G177219 NA other upstream 1171815 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1223430 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2350959 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 318620 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 349261 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 687557 20089238 ~ 20096711 (+)
G177950 NA other downstream 737141 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 994696 20396377 ~ 20399165 (+)

Expression


Co-expression Network