G177506


Basic Information

Item Value
gene id G177506
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19494175 ~ 19494374 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240433
TCCTGTTCATCTGAATTGAGTGAGCCGCAGTGTGTCTGGTCTCTGAGGAACTGCACTATGGAATACGCCAGTCGCTTTTCCACTGCCATTTTATCTGTGAAGAACTGAAAGTAAAAGGGTTTTTAGATGAAACAACACTTTACTGAAGCTCAATCTTCATTAAAAAGCTTCcattaaagggcccatatcctGCAGTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240433 True 200 lncRNA 0.42 1 19494175 19494374

Neighbor

gene id symbol gene type direction distance location
trappc13 trappc13,LOC107667267 coding upstream 18998 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 48517 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 168774 19261204 ~ 19325401 (+)
fam159b NA coding upstream 239368 19252744 ~ 19254807 (+)
cops4 cops4,csn4,LOC106562268 coding upstream 249588 19237435 ~ 19244587 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding downstream 9183 19503557 ~ 19522073 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 99727 19594101 ~ 19651418 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 402363 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 425503 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 654884 20149258 ~ 20150118 (+)
G177485 NA non-coding upstream 14333 19411626 ~ 19479842 (+)
G177479 NA non-coding upstream 92494 19397948 ~ 19401681 (+)
G177472 NA non-coding upstream 135426 19353968 ~ 19358749 (+)
G177449 NA non-coding upstream 278055 19214411 ~ 19216120 (+)
G177448 inip,LOC107658659,LOC107558675,LOC107571239 non-coding upstream 280863 19210944 ~ 19213312 (+)
LOC111195062 NA non-coding downstream 32553 19526927 ~ 19551020 (+)
G177819 NA non-coding downstream 245006 19739380 ~ 19739598 (+)
G177822 NA non-coding downstream 247250 19741624 ~ 19741851 (+)
G177826 tjp2 non-coding downstream 281466 19775840 ~ 19779536 (+)
G177830 NA non-coding downstream 300770 19795144 ~ 19833110 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 935731 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1163686 18324873 ~ 18330489 (+)
G177219 NA other upstream 1268042 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1319657 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2447186 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 225927 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 256568 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 594864 20089238 ~ 20096711 (+)
G177950 NA other downstream 644448 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 902003 20396377 ~ 20399165 (+)

Expression


Co-expression Network