G177526


Basic Information

Item Value
gene id G177526
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18171849 ~ 18174525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240457
TCGTACAAACCAATGATGTTTATTTTGCAGTCACAATGCTTACACTATATGTAGCAGACATCCAAACAATTCAACCAGCTACCTGATCACTCAAAGACTCAACACACAGTCGCcaaacagacacattcacaTCAGAAccaaaagaggagaaaaaggaaGAGGGAGGAACTCGGAGGAACATCCAGAAGAAGTCATGGGACGCGGTTAAAGAGATGAGCTAGATTCTTCACAAACAGTTAGCAGCAACATCCTGTCGAGAGTAGCACAAGTTGCTAAAATATTCCTTTCTGGATCTGACTGTAAATCTTCCATAATTCTGATGCATTATTTATCttctcattattaaaaaaatcggAATTCTTCAGAGGGGGTCATTCGTATTCGGACGAGGGAGAAGGGGGAGGGGTTAAAGCTAGAGGCAGCCGGCGGGTGTGATGATTGGTTCCTGCTGTGACGATGACGTAATTAAGTACCAGCTGATTGGTAAATGTACAGGCTACATCCTACAGGCCTCGTTACGGAGCCACGCCCGCTCCACCACACAGCTACTGTTACACTGGAAGCCTGTGAAGATCAAAGGAAAACGTTACCGCGAAGAAACCGACAAAAAGCTCAGAGCCGAACGACTGCAATACTACCACCACGATTATCAGTCTGATTATCTAATCACTtcccacagagagagagcggggaTCGGACACTCGAAGGCGGACGTCCGATATTTAGGCTACGTTCAGTTCAGACTGCAAGCGAATcatatttgtttctttaatCTTCAGATCTGTTGAGATGACTGTGTCCACACTTTAATCCGCTTCgcaagtgatcagatttgtgttaATGCTATATTCAGACTGCCAGCCCATATCTGGTAtctgatgtttttgttttttgttttgattgtatccagattgttttttttttcttaggttTGGACagttaaaaacaacagaaaaactgaTTTGAGCAAATCAGATCTAAACCACATTTGGAAGTAGTTTGAAATGTGATTATATAATTAGATTTGTACAGATGCATCTCAGTCTAAACGCTCAAATTGGATTTcaatgacataaaaaaaaaaacaaacaaaaaaaaaaacaaagtgatgGATAGGCTTGTGATGCCTAGACAGGCAAATCCAATCTAAACCACTTTACACAATCAATCTCAATCACAGATTCAATGTGATTTGagaaaaataaacccaaacacAATTATCTTACTCTGGTTTTGTCGTGTTgtgaatgataaaaaaaaaagatacactgAAATCTGATCTGTGCATCCAGACTGAGATGCATCTGTACAAATCTAATTATAATCACATTTAAACCACCTTTAAATGCAGTGTGAGTCCAATTTGTAAAAAATCCAGATCAGATTGCATGTGATTCATGGCCATTCAGACTATAAAAAATTAACCTGGATTCAGTGTAGATATGTTGATAATCAGATTGATCAGATCCAAAGTAATGAAAGCACTGGGGTAGAAGAAGACGatgcaccacagcaaccaatgcAGATACGCTTGTGATTAGATCTGATCTGATTTGAGAAAATGAAACACACCTCCCTCACTAATTCAAATTGTTGttgtgacaaaaaaaagcactgaaatTCGATCTGAGCGTCTAGACTAAGACCCATCTGATTGAGACAAATCTGattagaatcagaatcagaatcagatttTAGGTTGGCAGTCTAAACATAAACAGCAAGAAAGCATAAAATCTGCTTTTTGCAAATAGTTTCTAAAACCATATTTGGAAGTGGTCTCAAATGTGATAATAATCAGACcttgataccatagcaacccacGTAGATACTTGGATATGCGATAGCCAAACagacaaatctgatctgattacAGAAACAAATCTGATTCACCTGCGGTTTGAATACAGCCTTGGATACGGCTAGATATAAAGCCTGTCTTTCCCTTTAACCTACCTGCCCCAACACACCATTAGCAGTTCAttacaggtgtgtacaggtgtgtttgAGCAGGTCCGAGTCGAGCTGTCCTGCTTTAAAGCGACAGTTGGGCCGACGATGTACACAACAATTTTATCCTTGCGTTTTTAACTCAaccagttaatttttttaaggttgAAGAGTTAGCATTACAAGGCTAGTATAGCAGATTACAAAAGCCATTATGTACACCAGTTAGCATGCTAAAACCATTAGCATCATTCACTGAGGAGTGTAGGTGTTCAGTAATTGCTAACAAACTTTAACATACATGGTATGGTGTACACTATGtatatgggcaaaagtattggtACTAGATTTTGGTTTTGATGCTATGGTAAGGGACGTAGCTGTTAACTCATTTATCAGAAAGGGTGTCCACAATTTTTTGGACAGTTAGTGTATGTTAGcacagctaaaaacagtagCAGCCTGAACATGACCCATGTTCTTAAATCACAATGACAAAACCAACCACGTAAACAAGTCTATTAAAGACTACTGAACGATTTTAGCAAAATGCTAATTGGTGTACATAAGCAGGCATTAGCACATAAGCCAAACTATCGCTTTAATGCTCAGTTTAGGGAGCCTAAAGGCCgagagcagcatcagcagcgatgagagagagagagcagggaggAAAGGTTGATGTTTTTAACTCATCTTGGTAGTTTCAGGGCTGCTAGCGCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240457 True 2677 TUCP 0.39 1 18171849 18174525

Neighbor

gene id symbol gene type direction distance location
LOC103043435 NA coding downstream 36720 18103831 ~ 18135129 (-)
gfra2 gfra2,gfra2b,LOC107553714,LOC107688392,LOC107730424,LOC107705092,LOC107678045 coding downstream 229014 17833167 ~ 17942835 (-)
LOC111194990 NA coding downstream 347630 17819232 ~ 17824219 (-)
LOC103021521 LOC108435423,LOC105894643,LOC107685144,LOC107686434,LOC107595534,LOC107713339 coding downstream 609362 17553811 ~ 17562487 (-)
LOC103047074 sub1a,sub1,LOC103047074,LOC108435422,LOC107713349,LOC107686443,LOC107562553,LOC107685153 coding downstream 633565 17532406 ~ 17538284 (-)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 coding upstream 946 18175471 ~ 18181079 (-)
LOC103045884 NA coding upstream 49711 18224236 ~ 18226177 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding upstream 82867 18257392 ~ 18302042 (-)
LOC103046908 NA coding upstream 133328 18307853 ~ 18317562 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding upstream 175380 18349905 ~ 18388403 (-)
G177200 NA non-coding downstream 77124 18094518 ~ 18094725 (-)
G177193 NA non-coding downstream 157500 18014089 ~ 18014349 (-)
G177180 NA non-coding downstream 338778 17826352 ~ 17833071 (-)
G177156 NA non-coding downstream 464762 17702348 ~ 17707087 (-)
G177131 NA non-coding downstream 524931 17646517 ~ 17646918 (-)
G177533 NA non-coding upstream 38004 18212529 ~ 18217167 (-)
G177544 NA non-coding upstream 76200 18250725 ~ 18252681 (-)
G177545 NA non-coding upstream 88078 18262603 ~ 18267507 (-)
G177546 NA non-coding upstream 89278 18263803 ~ 18338466 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding upstream 150230 18324755 ~ 18328179 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2381205 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2606386 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3501179 14657270 ~ 14670670 (-)
G176138 NA other downstream 4099165 14069749 ~ 14072684 (-)
G176136 LOC108415819 other downstream 4105705 14063500 ~ 14066144 (-)
G177568 NA other upstream 223057 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 311117 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 440367 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 712503 18887028 ~ 18934600 (-)
G177704 NA other upstream 916621 19091146 ~ 19092146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020984 pbdc1,LOC106568135 coding CM030127.1 CM030127.1 40269641 ~ 40275638 (-)