G177545


Basic Information

Item Value
gene id G177545
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18262603 ~ 18267507 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240488
ataaaaataacagtcgttttgtctagcctcaaataagttaatagtttataaaggagcatctttctctcagataaagttaataatatatctttgttaaggaaaaaaaaacttgtcattagtgcctaatgtggtgtattacagatcacttttatcactttgcatcacttttaTCAAGCCCACCCTTtgaaacaaaatattgtaaattttatgaatcaaaccaatgacggACCATAGACAAATCTAAacctggcataggcctctctgctgtaaaaaaaaaaaaaaaagagaattgaatcgaatcgtgaccctaaaatcggaaataaaatcgaatcgagaatttagagaatcgtgacacccctaATATTTAGTGATTCCTTTAGATGTagagattggtgtcagaagtgtttaattttgtgttgtgtttaaacccgcccactagagggcagtgttgtactctttTGTTGGATCTCACTGTCCTGATCGGATatgaaaaacctttttttactcAGATCTAATAAAAATTatggtgtgtttttatactgacagttttttttacaccaatgTGATTTAATCAATCGTAATATCACCTTGATTGTAGTATTGCAAGTTGTTTACTGTGTTAGTTCGATTACTGGTAGTTGACTCCGCTGCAGAGGAGGGAGACTgagataaagttaaaaaaataaataaaaactgtgtaCTCCTAAATATTcgtattacttttttaaaatattaaaatatgcttTGATTCATTTCCTAAATCACCCAGTAATCAGCTGATCATGTGGTTATAACGTTACCCCTGCTGTTCCCGGTTCTCCGGTCGTCAGCTCACTGGGGGCGGCCGGTGTGGCCGTGTGATGCGATGCAGTGCTGATGACCCAGTTTAGCGTGATGCTGTTAGCATGCCGCTGCTTCCTGTCCTCGGCCGCGCGGACGCATTCACCGGCCTCTCGCGTCCTGCCGCTCTCACAcagctcacactcactcactcgcctCTCACTAACACTCTGCAGCCTGCTTGCTAGCATACTAATCATCTAATGCTAATTCTTTCCTAGCATCCTGCTGTTCTTAGTGCACTGACTGTAATTTCTAACATTTCTGCCCTGTATGCTCTCAGGTCTGGATTTGTTGAAGTGAAACACATTCCTTGAAACTTTAttcacttaaaactttatttttaaatttattttacttatttatttagttttttttgcaactgcaaACCCCATGGTGTAACAGCAAACTAATAGGctctctttttgtttgttgGAGGGTGGGAATTTTTAAcaaaatgctaatgttttagTCCCCAGCTAATGCATTACACcccctagctagctaacattctgCTGGCTAAAATGTTGGTCACAATAATTATTCTATGAACTTATCTAAAACATTTGTTGGCTGAAATTGGGGAGGGGCCAAGCTGCCGTAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240488 True 1447 lncRNA 0.38 2 18262603 18267507

Neighbor

gene id symbol gene type direction distance location
LOC103045884 NA coding downstream 36426 18224236 ~ 18226177 (-)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 coding downstream 81524 18175471 ~ 18181079 (-)
LOC103043435 NA coding downstream 127474 18103831 ~ 18135129 (-)
gfra2 gfra2,gfra2b,LOC107553714,LOC107688392,LOC107730424,LOC107705092,LOC107678045 coding downstream 319768 17833167 ~ 17942835 (-)
LOC111194990 NA coding downstream 438384 17819232 ~ 17824219 (-)
LOC103046908 NA coding upstream 40346 18307853 ~ 18317562 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding upstream 82398 18349905 ~ 18388403 (-)
tacc1 NA coding upstream 137496 18405003 ~ 18449203 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding upstream 191497 18459004 ~ 18482116 (-)
LOC103025514 NA coding upstream 298194 18565701 ~ 18570062 (-)
G177544 NA non-coding downstream 9922 18250725 ~ 18252681 (-)
G177533 NA non-coding downstream 45436 18212529 ~ 18217167 (-)
G177200 NA non-coding downstream 167878 18094518 ~ 18094725 (-)
G177193 NA non-coding downstream 248254 18014089 ~ 18014349 (-)
G177180 NA non-coding downstream 429532 17826352 ~ 17833071 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding upstream 57248 18324755 ~ 18328179 (-)
G177555 NA non-coding upstream 71037 18338544 ~ 18338832 (-)
G177559 NA non-coding upstream 80791 18348298 ~ 18348654 (-)
G177584 NA non-coding upstream 267378 18534885 ~ 18537687 (-)
G177589 NA non-coding upstream 281503 18549010 ~ 18550867 (-)
G177526 NA other downstream 88078 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2471959 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2697140 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3591933 14657270 ~ 14670670 (-)
G176138 NA other downstream 4189919 14069749 ~ 14072684 (-)
G177568 NA other upstream 130075 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 218135 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 347385 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 619521 18887028 ~ 18934600 (-)
G177704 NA other upstream 823639 19091146 ~ 19092146 (-)

Expression


Co-expression Network