G177546



Basic Information


Item Value
gene id G177546
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18263803 ~ 18338466 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU240489
aatatatatatatatatatacatctcaaatacatatttaggcctgtcacgataaatacataaaacatctgaattcattgctctttaaaagtaaTGTGTCAAGGCTTTATCATGCTGCtttgttttaattacattagtggcataaaatgttaattttcaaaaacaatTTAATCATATATAGCAGTAATGTCtggtacaatataatataatctgcAATAAAGTTATGGTGACAGGCCTTCActgtcctgctgctgctgagccTTCCCTCATGTCCTCTCTCACCTCTCCAGTCCATCTCACCCGttaacacacccacacactccttCTCTGGAGAATCCAGCCCATAATATGAGGGCTGAAGTGATTTTATAGATCAGTAACTCAGTTTGAGACTCGGCCCTTCAGAGCCGTGTGATCCTGATCCAGTTTGGagtataaaaatacacactgaTGGAGATTCAGCTGCTTCTGATTTTACTGAGTTTTATACAGTGATCTTATTTTTGggctaaagtaaaaaaaaaatctggctgttttgaaatgtttaattgtatgggttttgttttatatttcaatacATTTGTGTTTAGTGAAATTTTAAAGGAGTACACAGTTTTTCATCCTAATCTCTGTATTTTATAATCGGTTATAATTAGACTCGGTTGTTTTAGTCCGAATCTAAGTG

Function


GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA


RNA id representative length rna type GC content exon number start site end site
TU240489 True 684 lncRNA 0.34 2 18263803 18338466

Neighbor


gene id symbol gene type direction distance location
LOC103045884 NA coding downstream 37626 18224236 ~ 18226177 (-)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 coding downstream 82724 18175471 ~ 18181079 (-)
LOC103043435 NA coding downstream 128674 18103831 ~ 18135129 (-)
gfra2 gfra2,gfra2b,LOC107553714,LOC107688392,LOC107730424,LOC107705092,LOC107678045 coding downstream 320968 17833167 ~ 17942835 (-)
LOC111194990 NA coding downstream 439584 17819232 ~ 17824219 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding upstream 11439 18349905 ~ 18388403 (-)
tacc1 NA coding upstream 66537 18405003 ~ 18449203 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding upstream 120538 18459004 ~ 18482116 (-)
LOC103025514 NA coding upstream 227235 18565701 ~ 18570062 (-)
LOC103025819 rassf2 coding upstream 232763 18571229 ~ 18577765 (-)
G177544 NA non-coding downstream 11122 18250725 ~ 18252681 (-)
G177533 NA non-coding downstream 46636 18212529 ~ 18217167 (-)
G177200 NA non-coding downstream 169078 18094518 ~ 18094725 (-)
G177193 NA non-coding downstream 249454 18014089 ~ 18014349 (-)
G177180 NA non-coding downstream 430732 17826352 ~ 17833071 (-)
G177555 NA non-coding upstream 78 18338544 ~ 18338832 (-)
G177559 NA non-coding upstream 9832 18348298 ~ 18348654 (-)
G177584 NA non-coding upstream 196419 18534885 ~ 18537687 (-)
G177589 NA non-coding upstream 210544 18549010 ~ 18550867 (-)
G177596 NA non-coding upstream 222886 18561352 ~ 18565313 (-)
G177526 NA other downstream 89278 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2473159 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2698340 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3593133 14657270 ~ 14670670 (-)
G176138 NA other downstream 4191119 14069749 ~ 14072684 (-)
G177568 NA other upstream 59116 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 147176 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 276426 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 548562 18887028 ~ 18934600 (-)
G177704 NA other upstream 752680 19091146 ~ 19092146 (-)

Expression



Co-expression Network