G177559


Basic Information

Item Value
gene id G177559
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18348298 ~ 18348654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240507
CCAGATAACTAATTGACACATCAGCGTCAATCACATCAATGAcacatattttactatttatacagctctggaagaaaaataagagaccacttaagttaaaaatgatgagtttctttgatttttaccaaactaaaaacctctggaatataataaagtagaagttggatgatcacaagccatcaaaccaagcagaactgcttgaaattttgcaccaggagtggcataaatgtatccaaaagcagtgtgtaagactggtggaagagaacataccaaaatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaatctttatgaatatgaact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240507 True 357 lncRNA 0.33 1 18348298 18348654

Neighbor

gene id symbol gene type direction distance location
LOC103046908 NA coding downstream 30736 18307853 ~ 18317562 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding downstream 46256 18257392 ~ 18302042 (-)
LOC103045884 NA coding downstream 122121 18224236 ~ 18226177 (-)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 coding downstream 167219 18175471 ~ 18181079 (-)
LOC103043435 NA coding downstream 213169 18103831 ~ 18135129 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding upstream 1251 18349905 ~ 18388403 (-)
tacc1 NA coding upstream 56349 18405003 ~ 18449203 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding upstream 110350 18459004 ~ 18482116 (-)
LOC103025514 NA coding upstream 217047 18565701 ~ 18570062 (-)
LOC103025819 rassf2 coding upstream 222575 18571229 ~ 18577765 (-)
G177555 NA non-coding downstream 9466 18338544 ~ 18338832 (-)
G177546 NA non-coding downstream 9832 18263803 ~ 18338466 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding downstream 20119 18324755 ~ 18328179 (-)
G177545 NA non-coding downstream 80791 18262603 ~ 18267507 (-)
G177544 NA non-coding downstream 95617 18250725 ~ 18252681 (-)
G177584 NA non-coding upstream 186231 18534885 ~ 18537687 (-)
G177589 NA non-coding upstream 200356 18549010 ~ 18550867 (-)
G177596 NA non-coding upstream 212698 18561352 ~ 18565313 (-)
LOC111195060 NA non-coding upstream 271545 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 277635 18626289 ~ 18626532 (-)
G177526 NA other downstream 173773 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2557654 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2782835 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3677628 14657270 ~ 14670670 (-)
G176138 NA other downstream 4275614 14069749 ~ 14072684 (-)
G177568 NA other upstream 48928 18397582 ~ 18403008 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 136988 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 266238 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 538374 18887028 ~ 18934600 (-)
G177704 NA other upstream 742492 19091146 ~ 19092146 (-)

Expression


Co-expression Network