G177568


Basic Information

Item Value
gene id G177568
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18397582 ~ 18403008 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240520
GGGTGAGTTAATCTGAGGAAGGTGGGATTAGGAAGATCCGCAGgatcacacacacttacacacacactcacacactcctgctCAACATGAGGACTGTActggctctgctgctgctgctagccTCCGTGCTACACAGCGAGGCACTGAAATGTCACACCTGCGTCGCCGTCAACCAGGAGGACTGCGACAGACAGGGGTCATCGGTGTGTCCGGCTAATGCTGATGCATGCTCCACCATCATCGGGCCcaacTCGGTGATGAAGTCCTGCTCCTACAAGTCTTTCTGTGAGAAGGCCCACATGAGCGTCGGGGGGGTGAAGCTGGAGTGCTGCTTCAACGACGACTGTAACGGACCTCACCGCGCCCACAGTCACGGCGAGCACAGCGGTGCTCACACGCTCGGCTACAGTGCCACCCTGCTGCTGGGCACACTGCTTCTCAGAGCCCTGTAACCTCACACTGACCTcacactaaccacacacacctcacacactaacacaggtCACATGACGAGCCGGTGAGGGACTGATTCgttaaactttttaaactgttaaagaTCCCGTTACATTAAAACATacttagctaattagctaattaaGAGTAACCACAGTTTAGCCCATCCCATTTGTCTTACAGatatttagccccacccatatattctacagcagtttagcccctcccatATAGCCTACAACAGTTCAGCCCCACCCATTTTGCCTACAACAGTTAAACCCCACCCATTTATCCTATCGCAGTTTTACTTAAACCCTTAATCAATAACTTAATTGATTCATAACTTAATCATTATCGGATTAGCCCCATCCTACAGATGAGTCTATAGATGTTTAGTCATGATTAGTCATGACTCCTCCTATTTAATCAATACAGGTTTAGCCCCACCCTACAGACAAGCCTATAGACGTTCAACTCTGTCTGTTTAGCTCAACCCATTTGGTTTAAACACTTttgccccacccatttagcctttAAGTTTAACTTAAACCCCTCCCATTTAATCAATATATGATTAGCCCCACCCTACAGATGAGTCTATAGACATTTAAATactttagcctacagcagtctAGCCCCATTTATTTAGTAACAAAAATAGGTTTTTATTTATAGGCATTAATTaaggtaaattaaaaaaaatactgcatatATTACAAGGaattatgtgttccttaatcCACATATATGTCATGAGTTAACCTCagggaaaataaataagaagaataaataaatgcatgtataGGATGTGCGTGTAGTGTATGGGCCCTTTAAACTACTTCATTCTCTACGTCCACATCCCGAGGCTTACTGTTCATTCAAAGCAATGCACACTGACTCCACCCCATTTAGAGGAATGGAAATCAGTTTAAGAGTTTAAggggttatttatttataggattatAATTCAGTTATTCATTTTACTTACTTGatacttactgtatttattcAGAAACGATGATTGTACCTTTTAAGTTCTTTAGTTAAATGACCCAAAATATACTTCATGCAAGTATGCAAACGCTGTAGGAACTCAAGCGTACATTCTTGCAATTCAATACACAGGGGGGTGCTAGAGGACAAATCCTAGTGTCATGACTGTTGACTGGACAGTTAACACTGGTGATGCAAGATAGCTTCGTTGTTTGTTACTGTAGCGCCCCCTTGTGGCTCAGCTCAGAATGCAGCTCGCACTTGTGTTGTATTGTGAAATTGGTTGACACATTGTTTGTAGAAAAGCTCAAAGCATTTGCGTTTATGTCCTTGTGTGAAGTATATTTAAGGCCAATTAGTGTTACATTATTAAGGTTATCTAACTTACACTTTTGTACTTCTGACTGCATAGACCACCTAGTTACCTGAACTTACTACTGCATTATGCTGTATATTTAAGGGATGTCAGAAACTGGGAAAttatactatttataatgtttcTTGATTGGTACACAGATTCACAAGTTTGCTAAATGCAGCACCACACTCtttgctgtattatttatagataaataaagctaaataaatctaaataaagctGA

Function

NR:

description
PREDICTED: protein NLRC3-like, partial

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU240520 True 2048 TUCP 0.41 3 18397582 18403008

Neighbor

gene id symbol gene type direction distance location
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 9179 18349905 ~ 18388403 (-)
LOC103046908 NA coding downstream 80020 18307853 ~ 18317562 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding downstream 95540 18257392 ~ 18302042 (-)
LOC103045884 NA coding downstream 171405 18224236 ~ 18226177 (-)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 coding downstream 216503 18175471 ~ 18181079 (-)
tacc1 NA coding upstream 1995 18405003 ~ 18449203 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding upstream 55996 18459004 ~ 18482116 (-)
LOC103025514 NA coding upstream 162693 18565701 ~ 18570062 (-)
LOC103025819 rassf2 coding upstream 168221 18571229 ~ 18577765 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding upstream 176743 18579751 ~ 18595814 (-)
G177559 NA non-coding downstream 48928 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 58750 18338544 ~ 18338832 (-)
G177546 NA non-coding downstream 59116 18263803 ~ 18338466 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding downstream 69403 18324755 ~ 18328179 (-)
G177545 NA non-coding downstream 130075 18262603 ~ 18267507 (-)
G177584 NA non-coding upstream 131877 18534885 ~ 18537687 (-)
G177589 NA non-coding upstream 146002 18549010 ~ 18550867 (-)
G177596 NA non-coding upstream 158344 18561352 ~ 18565313 (-)
LOC111195060 NA non-coding upstream 217191 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 223281 18626289 ~ 18626532 (-)
G177526 NA other downstream 223057 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2606938 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2832119 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3726912 14657270 ~ 14670670 (-)
G176138 NA other downstream 4324898 14069749 ~ 14072684 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 82634 18485642 ~ 18531635 (-)
LOC111195059 NA other upstream 211884 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 484020 18887028 ~ 18934600 (-)
G177704 NA other upstream 688138 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 716778 19119786 ~ 19128123 (-)

Expression


Co-expression Network