nsd3 (whsc1l1,LOC107720716,LOC107687514,LOC107705078)


Basic Information

Item Value
gene id nsd3
gene name whsc1l1,LOC107720716,LOC107687514,LOC107705078
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18485642 ~ 18531635 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240523
TCTAAAATAAATTCTAAACAAAGcaaactttaaatttaaattacatttggctaatataacagtgtgtatttggtgtgtgtgtgtgtgtgtgtacacaggtgtgtgAGGTGTTTGGGGACTCCCTGCTGAGCTGTGAGGGAGACTGTAACAGACTGTTTCACCCCGAGTGTCTGACCTCCGCCGGCGGGACAGAGGGAGAGACCATCTGCACCGAGTGCAGGACAGGTCTGACTAATAAccaacactatttttattattattattattattattattattattattattattattatt
>XM_022680715.1
GGCGCTGAGCGCAGGGGGGGGCTTTTGTTGGAGCCGTGGAGACACACAGCACAGGCTGGAATTAAATATATGGCAGACAGATTTCCCCCCGGTCTGCAAAACCCCGCAGATAAACACAGGAACAGAGGGAAAAGCGGGAACGGCGGAGCGGGGCCTGTCCCGATCCCACAGCCTGCAGCTTTCCCAGCGTGGAGACCCGGAGCGCGGACTGAGCTAGCCCCGCTTATCGCCAGCCGAATAGCGCTGTAGAAACAAACGCTGTTTATTCAGCTTGTTTACCCTTTGTGTgcttatatatacacatatatacatatatatatcggTGTAAAGatttgttatatatgtgtatatagtgATATTTACGTTCACTGCCTCTGGAGTCACGTTATTTCGCTGTATTTGTTTAGGATGGAACACGCTGAAGACCCTGTAAGAAAAAGGGAAACTTAAAGGATGCTGGAGCAGAACAATGgatttctccttctctttcatgCAAGGGATCATGGGAAACACAATTCAGCAACCCCCTCAGCTCATTGACTCGGCCAACATCAGACAGGAGGACGTATACGATGCCATCAGTGAACCAGGGGACGAGGGCGGACCCCCCACGTACGAATCTCCGCTGGAGTCCGGTTTCTCCTACCCTCCTGAAGACCTGCCCGTGGTCGCCAACGGCTACCCGACGGGGATCGGCACTTATGAGCACCAGGCCAAGTTCGCCCTGTACTCGCAGTACCCCAACGGCTCGGCCAATGGCTACGGTGCCATCCGCAACTACAGTGACCACGGCCTGCTGCTCGGCGAGGGAACCGTGCTGAGAACGCCGGTGGTCCAGGAGAAGCCGTCATCACACATCtcctctcctccacctccaGCTCACTCCCACCTTCATCACCAGCCTCATCCTGCTCACACTCACCCTCACCATCAGCACCAACAGCAGcaccatcagcatcagcagcaccaTCACCCGCCCAACCCGCAGCTCATACCtcagcagcaccaccaccaccaccctcctcatcctcctgcCCAGTCCTCGCACCTCCTTCCTTCTGTTTTCCCTCCTCCGCCTCCTCTGCTCCTCCCCACCTCTCCTCCCCCTCAACCCGTCCACAACACCAACGCCGCCGCCTCCCACCCCCTCGCACACCACTCCGCCGTTGTCACCCCGAGAAAGACGGAAAAAAGCTCCCCAGAAATCAAGATCAAAATCATCAAGACGTACCAGAACGGCCGGGAGCTGTTTGAGTCATCGCTGTGCGGGGACCTGCTACAGGAGTTCCAGGCCAACCAGACGTCCCCCAGGAGGCACGagcagaagaaggagaagagaaaaaaacgaAGCGGGCGACAGGCTGCTGCTCTCGGCGTTGCCGCCGCCGCAGTCGCCTTTCCCGAGCAGGTCGAGCAGGACAGAACGGACCAAATCCCCGGCCCACCTCAGCTCAGCGAGGGGCACAGCGTGTTGCAGGAACCGCAACCTGTGGTGACCATCAGGAGCCCAAACGCAGAACCCAAGGAACTCAAGgtgGAGAAGCACTTCCCGTCGGTCATCACCAGcacaggagtgtgtgtggagtacGAGATCGGGGACCTGGTGTGGGCTAAAGTGGGAACGTTTCCATGGTGGCCCTGCATGGTCTCCTCAGACCCCCAGCTGAAGGTCCACATTCGCATTAACACCAGAGGTCACAGAGAGTACCACGTTCAGTTTTTCGGCAGTGTGGCGGAGCGGGCATGGATCCATGAGAAAAGGATTGTGGTTTATAAGGGAGCGAGTCAGTTTGAGGAACTTCAGGCAGAAACACTTCGCAAAACCACCAACCCCACTGAGAGGCAGAAGctgctgaagcctcaGTCTCAGCATGAGCGTGCTCAGTGGGAGGTGGGTGTCGGCCACGCGGAGTCGGCGCTGCTAATGTCCCGCGAGGAACGCAACGAGAATTACACCTTCATCTATATCGACAAGCAGCCCGGCGACGAGCCCGAGCCTGTCTCCTCCCCCACCACCAAGACCAAAAAGCTGGCCCGGCCCGAGCGTCGCGCCCGCCGCTCCCGCAGCGCTAGGGAGGAAGTGCTGCCACGGCGACAACAGCCCCGCCGCCAGTGCAGCATCACCAGCGCCGAGGAGCACAGCTCATCCAATCAGGCGGATGCGGACGACTCGGACCACAGTCATGAAGATGAGCCTCCAAGTCCTGAAGAAAGCACACCAAGCCCCCGGGAGCCGTCGCCCCCGCCGGTCCGGACCCCCTGGAAGACTGCCGCAGCCCGCAAGCTCCTCCCACTCTCAATCACCATGAAGAAGCTCAATGTGGAGATCATTAAATGCGACTGGCAGCTGCCCAAAGTGAAGGTGGAGCCTTTGCCCAAGCaggtggaggaagaggagagaaCCATGGTCCAATCACCAGAGGGCTCGAGTGATAAAGCGGAGGCGTGCTCCAGTGAAGAGGAGCGAGCAGCTTCACCCACAACCTGGAGCGACCCGGAGAGTGGAGAACACGCAtctacaggtacacacgtgtgtgAGGTGTTTGGGGACTCCCTGCTGAGCTGTGAGGGAGACTGTAACAGACTGTTTCACCCCGAGTGTCTGACCTCCGCCGGCGGGACAGAGGGAGAGACCATCTGCACCGAGTGCAGGACAGGTCTGACTAATAAccaacactatttttattattattattattattattatcaccTCTGCTCGCCCGTAAACGTAGGCTGGTGTTTCATATGCGCCCGAGGGCTCTTAGTGCACGACCACACTGACACCGTATTAAGTTCTTATACCTTTAAGTCTCACTACCTTCTGACTGAGTCAAATCGTGCTGAGTTGATGAAATTACCTATGATTCCTTCTTCTTCGTCAGCTACCAAAAAGAATGTCGGAAAAGgaGGAAGACTGCTGTGTTGTGAAGCATGCCCTGCCTCCTTCCACCCCTCCTGCCTGAACATTGAGATGCCGGAGGGGGTGTGGCTTTGCAGTGAGTGCAGGGCGGGCAAGAAACCCCACTACAAACAGATCGTCTGGGTCAAACTGGGCAACTACAGGTGGTGGCCTGCTGAAATCTGCAACCCTCGTCTGGTTCCGTCTAACATCCAAAGTCTGAAACACGATGTTGGAGACTTTCCTGTCTTCTTCTTCGGTTCTCACGACTACTACTGGATCCACCAGGGCCGGGTGTTCCCGTATGTGGAGAGCGACAAGAACTTTGCTGAGGGACAAGTCGGCATTAACAAGACCTTTAAGAAGGctCTTGAGGAGGCAGCGAAGAGGTTCCAGGAGCTGAAGGCTCAGCGTGAGACAAAAGAAGCTCTGGAACAGGAGAGGAACTCCCGCAGACCTCCACCATACAAACTCATTAAGGCCAATAAGCCGGTTGGGAAGGTGCAGGTCCATGTGGCCGATCTGTCAGAAGTCCCTCGCTGTAACTGCAGGCCGACAGACGAGCGGCCGTGTGGGCAGGACTCGCAGTGTTTGAACCGCATGCTGCAGTACGAGTGCCACCCCCAGGTGTGTCCGGCCGCCGAGCGCTGCCTCAACCAAAGCTTCTCCAAACGCGTCTACCCCGACACCGAGGTCATCAAAACCAGCGGCCGAGGGTGGGGCCTCAAAACCAAACAGGACCTGAAGAAGGGAGATTTTATAATGGAATACGTCGGAGAGCTGATTGACTTGGAAGAGTGTCGTCAGCGAATAAGCCACGCAAACAAGAACCACATAACCAACTTTTACATGCTGACCCTCACCAAggatCGTGTGATAGACGCTGGACCCAAAGGAAATCTCTCTCGCTTCATGAACCACAGCTGCAGCCCTAACTGTGAGACGCAGAAGTGGACTGTGAACGGGGATATTCGCATTGGCCTCTTCACACTATGTGACATCGCAGCGGaTACTGAGCTGACGTTTAACTATAACCTGGATTGTCTGGGGAACGGGAGGACGTCGTGCCACTGCGGGGCTGAAAACTGCAGCGGCTTCCTGGGAGTTCGGCCCAAGAGCGCGGTGGTGATGGAGAGGGAAGAGAAGGTGAAGAACTCCAAGCTGAAGGCCAAGAAGCGTAAGCTGAAGCTGGAGAGCAGACAAACCCACGAGTATTACTGCTTCTGCTGCGGCGAGGGCGGCGAGCTCGTCATGTGCGACAGGAAGGACTGCCCTAAAGCCTATCACCTGCTCTGCCTCAACCTCACCAAGCCTCCCTATGgtcgCTGGGAGTGCCCGTGGCACCAGTGCAGTGTATGCCAGCGCCCTGCCTCTGCTTCCTGCCAGTTCTGCCCCGAATCGTTCTGCCGTGAACACGAGGCGGGTCAGCTGAAGGTCTCGGCCCAAGACGGCCTACCCTGCTGCTCGAAACACGACCCAGCCCAAACCGGCCAGGCCCGAGTGAAACAGGAGCAACCAGAGCCCGgagaggaggaggcggaggaggaggaagaggaggagttaGAATCGGGAGGCGGAGCTAAAGgtggagataaagagaaagggGGAGGAGGAAAGGGAGAGGACGTGCGCAAGTAACTGAGCATGagactaaaaaaacaaacccgGTGACTGGagataaaatgaaagaaacaaaaaaaacataccctCCAAGCAGCCAGGGGCCGCTGTGATCGATCAGAAATCAAATAGATACAAGTGTTATTTGTTATCCATTCCAGGTGTGCTGCGGCAGCTGGCGCTTTTTTGAGCCGTGACGTCACGGTTTTACGACATAGCTTCTTTGGAAACAGCACGTTATGGGTCGGCGGATGGACACAGGATGGGGGATCAACTAAACGTCActttaccaatgtttttttttttctttcttgggCCGTATGGGAAGCCTCGAGGCTTTTAAACCACGGCAGCTCGGTTTCAATCCCGACACGGTACCTGCATCACACTCCAGAACTCCAGACTCGATTTTATGTACCTCATGTAAATAGAAAGGATTCCGCGTAGGACGAGACGCGTAGTTCCTCAAAAAAAACGCAAGGAAGGAGTTCGCTGCAAATTCCGAAGTCAGCTGACTGGGAGCGGTACTGTTTGACAAAGGAAGACAAAAACAGACCGGACTGGATGTGGCTGAGGTTTGGTTACGTGCTGCCACTTCATACCCGTGTGTTTGTGATTTGTAagatatatatcattattaatatatttatgacTATGTTTACATCCACTCACAAGTGTACAGTATTGTTCATTGGTATTAGTGAGTTTGATATAACTATTCTTAATGTTGTAAATGTGCCCTTTTTGTCAGCGAAATGATGATTAGCCTTCTTCATCGCTTGGCCTTCTtcctttttctgttgtttttgcgccactttctctctctctcacactctgtatttctcttttcGTAAGATAATGTTCAGAATTCACACCGCATATATTACAAATCATGATCTACAGTAATGCTCAAACACGGCTAGCACTTGTTCAcatctttacattttacactttatCTTCTTGCCTGAGATACGAGGTTTCTTCAGTGTTATTACCAGCTTTACCAGCGAAAATGCGAAACCTCGTAACAAATCAAAACTTAGTAACATGGAAACCTCGATCTGGCCATCGCAGATAATAACCCGAACACTGCCATCTTGCCAAATTTCGCCGTCGTTAGTATTGTGCCAATATGAGTATCCCGTAGGAAATGGTTTGTTTCATTTGAGCACTGCTGTACGATGTAATTTACACATTTAGCGCATTAACGCGTTAAATGTTGTGTTTCTTACGGACGTGTTTGTAAATACGATctctgtttagtttattttcggTGGCGTTGTAATCATCTCTTGTATCATCATGCATATTGTACAATAGTGACGACATTTTGCCGCTTTCATGTTCGAAGCGTGCCGTACGTAATTTCCCAGAGCTCATTTTTTAGTCTCAAACGGTCAGTGTTTTTGTACCACATTTTGTCTTAATGACGTAATGCAGAAAACTGTTGCTAAAGGAGAAAAGGGAGATCTCTGAAATCTTTGGACGTGACCTGGATTTCGGAGTTGCGTGGTCTGCGGCAGAGTGTAGCATAAACCTGGATAACGTAATTTCTACTTCTCGATGTAAATCTGAGTGATAATTAAAACCTCCATAGCGGCGGCGGTGTTCCCCCTGCTCAGCGTAACGGTGTCGTGACTCCGCGCTCGGTAGATCTGTGATGTGCAGTACTGTGCTTGAGAACTCGTTCATCTCTCTTTAGGCTGCGTTTACCAAACAGCAGTAGAAGCACTTCACTAATTTCTGACTCATTTCACCCTCGTCTCCTCCCAGGACTGTGTGAGGTACTGTGTGCGCTGTATTCATGCAACCCGAGCCTcagtgtgacttttttttttttcttttcctaatcatgttacaatttttttttcagtattccTCTTTAAACCCTCTTATAAATAATCCGGGCCACATTTATTGTTCCCtaaagaggtttttaattaattaagaaaagctgcttttatttacttaaaaatagaGATTTATTAATACAAAAGGactgttttattcttttagtTTCCACAGAGAATCTTAGTATTACAGATTATCttcacataataaaaaaaagctcagtttaaaaCTCACTATTTAAACTATGTTAGAGTCAGCTCAGAATTTGTGCCCAATATGCCATACTAAAGAAGGTTTAATTTTAACCAGAGGGGGcgacaaaaacactttttaacctGCAATTAGAAAGCTATTATAATGGTATTAACAACTTTTATAAAATGAATCAGCAACTGCTGTGCTGCTTATGATGTTTCATTAAAACCTGAAAGGAAAAATTGGCAAACATACgtcattaaatatataacatttattttttaaaaaagcacagaATTATGCCAGATTTGTGTCTGGTATCTCCCACTGGGGCAGTTTTCTTGTTCACCAGAGGGGGcgacaaaaacacaatttaatagttacattttataaaatataaaatacaaataaatgaattttgCCATTCTCCAAATCTGCAAACCTTTtcattataaatatgaatttaaataaaattcgaaaaattagcaaaaaatctattgatTTATACAGTTTTACCCAAAGCATCTTAGTATTACAGATCGTGTTGActggtaaagagagagagagagagagagagagagagaaagtgagtgttTAGTGTGATGATTGCTTAACCATTTGTGCCCAGCATGTCTTACTGTGGCAGTTTTAATGTTCACCAGAGGGGGTGTCAAAGGCACCCTTTAAGTACAATTATCAAATATGAAATACAAAGTTAATTTTAGACAATTTTGCCACTTTTCAAAACTGTAAACTTCCACAACactattaaaatgataaaagtcTAAATAAACTAGTATTACTCCCAGAAGACCATAGTGTGGTTCGATATCAGTTGTAGCCGCTTCCTCCTAAAATTGGGCCAAGAACccattttcattattattattattattattattattataattattaagaGTGGAAACGGTCCAGCTCTAAAGTTTATCACACTGTGTTCATCAATGGGAGACAAACATGTTGCCAGTTTTGAGTTTATTTGAATCACTTTTtccttgttttgttcttttttttatgtatacatCTGTTTAATGTTGGATGCATGTAGGTGAAGTGTGCATCCACATTTCTGCCAAACCGAAGCTTTTATTCACCATGTATTACTTTCTACCGTTATCTGTGCGCTGTTTCTACCATCCCAATCTGCATTTTGTTATGTTTAAAAGGGGAACTCCACCAAAATTAAATTCCTAAATAATTCCGTTTCACATGAACTTTgaattcagagtgggggtttgagattatgTATTTGTAACAGGTGATTGTACAATAGTGTAAcatctgaacttttttttggctcaccACGCCTCATGTTGTATTCCTTCACCATTTCAATGATATGCaattttaaaaacaagttttaaagcCAAAATATTCTTAGAACTCTGAGAAAGCAGTGTGTTGGGTAACAAGCAGTGTATTTATAACCATTTACTGTAATAACTTTCAATGGGGACGGGGCTTAGAACTTAGACGTTACATCTGATTATCTAGAATGAGGAGATTAATGAGCCACTGACTGCAATATGAATAAGATTTTTCTTGTAACCCTATTCATGGTGCCTGTTTATGGATAAAATCCTGTCCTTTatcaaaaacagccaatcagcttgctggttgtgGCAAAAGCAgaggagatctgtgcaagtgcaGCAGAAACACATTTTAGTGCATTTTTAAGTGAAACGCTACAAACTAATCATGAGgttttataatatttgtatctgggattttaaatatgtttttgacCTTTAGTTTCCAGTATTTTGACTGAGAAAACTGACTTTTGTATAAGAAGTTTGCACCAAACCTACTCTGAATGTTCATAATGTCAACCATTTCATTGTGGTGGAATTTAGCAATTTTAGTGGAGTTCCTCTTTAAAAATGAAGCGCTGTTTAAGTCTCATgcacttttccttttttgtgttCTGTTATGTTGGCCTTAACAATGATTTTACTCTCATGTACGATATTTGTAAACTTTTTTATCATCATTTAGCACTTTCCTCCACTTTTTTTCTAAAGACCAATGTGTTCttcatgtatgtgtgtatgtatgtatgtatgtgaatgatgtgtatgtgtggtaACGGTTCGTCCGTGTGGGAGGAACGCTCAGAGGCGGCGGCAGAACGTTTCACCATGTACGGTGGTGTCGTCGTTCGGTTGTGGTGCGTTCCTCTGGGAGAGAGTTCTGCTTTGGTATCCCAGCATGTAATACTCCAACCTCTACAGGCTCCGCCCTGACTCGTcgctgtttatttctttattttatatatattttttggactgaTGCACAATAATgccttgtttattttctgttttttgcttttatttcatgtttattcCACAGTTAGTCGTAGTATTTCTGATATTTCTGAAATGCAGTTCTTTGTTACTCGTGCGGTGGCTCTCTTTTATTGTTTCATTAGAATTATATACGAAATGTCGTACATTTCAGGAGCCCCTTTTTATTTCTGCCATATCAGCTGTTTAACGTTTTGTATACCTCCTTAAAGCTGTTCCGAGTGTTAGTGCACTGTACTTCATCCTTTTTTATATGAATATGTGATTTAAAGTGTCATAAACATCTTGTGCTTATTCA

Function

symbol description
whsc1l1 [histone H3]-lysine4 N-dimethyltransferase / [histone H3]-lysine27 N-dimethyltransferase

NR:

description
PREDICTED: histone-lysine N-methyltransferase NSD3

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11425 WHSC1L1, NSD3; [histone H3]-lysine4 N-dimethyltransferase / [histone H3]-lysine27 N-dimethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU240523 False 297 lncRNA 0.38 2 18504398 18531635
XM_022680715.1 True 9190 mRNA 0.47 19 18485642 18521869

Neighbor

gene id symbol gene type direction distance location
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 3526 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 36439 18405003 ~ 18449203 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 97239 18349905 ~ 18388403 (-)
LOC103046908 NA coding downstream 168080 18307853 ~ 18317562 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding downstream 183600 18257392 ~ 18302042 (-)
LOC103025514 NA coding upstream 34066 18565701 ~ 18570062 (-)
LOC103025819 rassf2 coding upstream 39594 18571229 ~ 18577765 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding upstream 48116 18579751 ~ 18595814 (-)
pcna pcna,LOC107658578,LOC107583397 coding upstream 72909 18604544 ~ 18609133 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 117151 18648786 ~ 18684766 (-)
G177559 NA non-coding downstream 136988 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 146810 18338544 ~ 18338832 (-)
G177546 NA non-coding downstream 147176 18263803 ~ 18338466 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding downstream 157463 18324755 ~ 18328179 (-)
G177545 NA non-coding downstream 218135 18262603 ~ 18267507 (-)
G177584 NA non-coding upstream 3250 18534885 ~ 18537687 (-)
G177589 NA non-coding upstream 17375 18549010 ~ 18550867 (-)
G177596 NA non-coding upstream 29717 18561352 ~ 18565313 (-)
LOC111195060 NA non-coding upstream 88564 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 94654 18626289 ~ 18626532 (-)
G177568 NA other downstream 82634 18397582 ~ 18403008 (-)
G177526 NA other downstream 311117 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2694998 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2920179 15528296 ~ 15565463 (-)
LOC103044788 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 other downstream 3814972 14657270 ~ 14670670 (-)
LOC111195059 NA other upstream 83257 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 355393 18887028 ~ 18934600 (-)
G177704 NA other upstream 559511 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 588151 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1207014 19738649 ~ 19739313 (-)

Expression


Co-expression Network