G177589


Basic Information

Item Value
gene id G177589
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18549010 ~ 18550867 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240543
TGACTGAGCGCATCTGCTCCTCTTTACTGTCTTTCTCACTGATGACCTTTGATGTCGTAACACTGACCTCTCGCCCGTCCACCATGAACTTACGAGTCTTCTTCACTGTCCTGCGGTTCATGGACAAAACCTGAAAATagacacacaccccacacacacacacaaccCCTTCATCAGTAGGAGACAGTGGTGGAGGTGGACCGTTCTTCTCGTGGTCAGTGTTGGAGGAGATGGACAGTACTGTGGGTTTTTGGAGGTTCTGATGAAGAGTCCCGTTCGTCTCGGTGTTAACTGGTTCTGCTTTATTCCCCACAGATCCTCCGTTACCGATACAGCCCGACCCGTCAACCCCCTCCCCCGCCTCCCGATTGTCCGGCTCTCCGGCGAAGCTCACCTGCTTACTGACTTTAATCACCTTCTCTCCCGAGGAATCCTGCTTAGTCTTCCCAGACTCTACCTCACGAGGTTCTGAGGTACTGCTCACAGCTGTACCTTCAGAACCAGAACTTTCAGGAAGATTTATGCTTTGAGGACGCTCTGATTTGTCAGTTTCTGtggttttatctttattttcctCACCTTGTACCTTATCATCCTCTCGCATCAATTCCTCACCTTTCATGTCTTCTTCAATCTGTAcctcttttactttttcaaagcCACTTTTAAGTACATTGATGCTTTGATGTTGGTCTGATTTGTCAGTTTCTTGTCTGTTGTCATCTCTATTTTCTTTATCTTCTACCTCATCCTTCTGCCTCAATTCCTCACTTGTCTTCTCTTCTTTGATCTTTACCTCGTTTACCACTTCAGAGCCAGAACTATTGGGAAGACTGACACTTTGATGTTGGTCTAATTTGTCAGTTTTTGGAGTTGTATCTTTATTTTCTTCACTTTGTGCTTCATCCTCATGCCTCAATTCCTGATCTATCATGTCTTCTTTGATCTTTACCTCGTTTACTACTTCAGAGCCACAACTTTTGGGAAGACTGACACTTTGATGTTGAACTGATTTGTCAGTTATTGTGGTTTTATCCTTAGTTTCCTCACCTTCTAGCTCATCCTCATTCCTCACCACCTGATCTATTTTATCTTCGTTGATCTTCACCTCATTGTCTTTGAGGTAAACTTGTTCAGAATCGTTTAGAGGAGATTCCTGCTCTTCCAGCTCTTCCTTGCCGTTGCTGGAGGAGGTAACTTCCATTATTTGTGGTGCTTCTTCAGCACTTTCTTTTGTTATTATATTGTCACTTGGACTCTCAGCATCTGAGAGATGGTTCTCCACACTTTCAaaatctttatctgtctctgatTTATCCTCCAAACCTTCTTTAAAGTCTTTAGTATCTTGAGTTTCTGCTCCTCCATCTTCTTCTATTCTTCCTGTGTCAGTTTTCTCTTCTTTGTTCGCCTGATCAGAAGTGTAAGTCGGGTTCTCCGCCTGTTTCTGATGTTCCTGGTGTTCCTCGCAGGTATTTGTACTCTCTTTCTCCACTGCTGGGCTTCTGCTAAGCTCTTCTTTAGTGAAGGAAAGCTGAGCCTGTGATGTAAATCCGGCTAAATCCAGGTAATCGTGTGAACGGTCCTTTTTCGCTTCAACTGGTTCACTTCTGTTTGATGTATCCAAACTCAGAGCCTCGGTCAGGAGATCTGTATCATCCTGGTTCTTTTCGTTGGTTGTCGAGTCAGGAGGGTGGAGGCATCTCCAGAATGCTGGTTCCTGATTGGCTCCATCCTCAACCACAGCTTTAGCTTCTGCACTACACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240543 True 1769 lncRNA 0.45 2 18549010 18550867

Neighbor

gene id symbol gene type direction distance location
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 66894 18459004 ~ 18482116 (-)
tacc1 NA coding downstream 99807 18405003 ~ 18449203 (-)
LOC103021760 loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 coding downstream 160607 18349905 ~ 18388403 (-)
LOC103046908 NA coding downstream 231448 18307853 ~ 18317562 (-)
LOC103046193 LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 coding downstream 246968 18257392 ~ 18302042 (-)
LOC103025514 NA coding upstream 14834 18565701 ~ 18570062 (-)
LOC103025819 rassf2 coding upstream 20362 18571229 ~ 18577765 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding upstream 28884 18579751 ~ 18595814 (-)
pcna pcna,LOC107658578,LOC107583397 coding upstream 53677 18604544 ~ 18609133 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 97919 18648786 ~ 18684766 (-)
G177584 NA non-coding downstream 11323 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 200356 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 210178 18338544 ~ 18338832 (-)
G177546 NA non-coding downstream 210544 18263803 ~ 18338466 (-)
G177551 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 non-coding downstream 220831 18324755 ~ 18328179 (-)
G177596 NA non-coding upstream 10485 18561352 ~ 18565313 (-)
LOC111195060 NA non-coding upstream 69332 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 75422 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 78432 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 81547 18632414 ~ 18632670 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 17375 18485642 ~ 18531635 (-)
G177568 NA other downstream 146002 18397582 ~ 18403008 (-)
G177526 NA other downstream 374485 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2758366 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 2983547 15528296 ~ 15565463 (-)
LOC111195059 NA other upstream 64025 18614892 ~ 18618612 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 336161 18887028 ~ 18934600 (-)
G177704 NA other upstream 540279 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 568919 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1187782 19738649 ~ 19739313 (-)

Expression


Co-expression Network